| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,056,880 – 25,056,984 |
| Length | 104 |
| Max. P | 0.960338 |
| Location | 25,056,880 – 25,056,984 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 73.98 |
| Mean single sequence MFE | -39.05 |
| Consensus MFE | -19.55 |
| Energy contribution | -20.63 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.50 |
| SVM decision value | 1.51 |
| SVM RNA-class probability | 0.960338 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25056880 104 + 27905053 -CUGGAGGAC------UCAAAAGAACGCGGGGCAACAAGCUUCUAAAAGAGCUCGA---GAUCCAAUCGCCGGAAACGGCGGCCGCUAUUGCGGCAGCACAGGCGGAACUCAAC -.....(..(------((...((((.((..(....)..))))))....)))..)((---(.(((...(((((....)))))(((((....))))).((....))))).)))... ( -44.10) >DroVir_CAF1 641 102 + 1 GUCGGCGGUC------GUAACCGAAAGCGUCGCAACAGGAUU------GAGCUAGAUUUGAAUUUCUCAGCGGAGACAGCGGCGGCCAUUGCGGCAGCUCAAAUUGAGCUUGAU (.(((((.((------(....)))...))))))......((.------.((((.(((((((...((((....))))..((.((.((....)).)).))))))))).))))..)) ( -33.00) >DroSim_CAF1 827 104 + 1 -CUGGAGGAC------UCAAAAGAACGCGGGGCAACAAGCUUCUGAGAGAGCUUGA---GAUCCAAUCGCCGGAAACGGCGGCCGCUAUUGCGGCAGCACAGGCUGAACUUAAC -...(((..(------((...((((.((..(....)..))))))..)))((((((.---........(((((....)))))(((((....)))))....))))))...)))... ( -43.70) >DroEre_CAF1 3433 104 + 1 -CUGGAGGAC------UCAAAAGGACGCGCGGCAACAAGCUUCUGAGAGAGAUCGA---GAUACAUUCGCCGGAAACGGCGGCCGCAAUUGCGGCAGCACAGGCCGAACUCAAC -...(((..(------((....(((.((..(....)..)).)))....))).(((.---........(((((....)))))(((((....))))).........))).)))... ( -38.40) >DroYak_CAF1 888 104 + 1 -CUGGAGGAA------UCAAAAGGACGCGGGGCAACAAGCUUCUGAGAGAGAUCGA---GAUCUAUUCGCCGGAAACGGCGGCCGCUAUUGCGGCAGCACAGGCCGAACUCAAC -.........------((...((((.((..(....)..))))))..))(((.(((.---(.(((...(((((....)))))(((((....))))).....))))))).)))... ( -38.80) >DroAna_CAF1 738 108 + 1 ---GGAGGAACGGGUCGGGCCAGGACACGCCGGAAUAAGCUAUUAAGCGAGCUAGA---GACCUACUCGCCAGAAACGGCGGCCGCCAUCGCGGCAGCACAACUCGAGCUAGAC ---...((..(((((.(.((.......(((((...(((....))).(((((.(((.---...))))))))......)))))(((((....))))).)).).)))))..)).... ( -36.30) >consensus _CUGGAGGAC______UCAAAAGAACGCGGGGCAACAAGCUUCUGAGAGAGCUCGA___GAUCCAAUCGCCGGAAACGGCGGCCGCUAUUGCGGCAGCACAGGCCGAACUCAAC ................................................(((.(((............(((((....)))))(((((....))))).........))).)))... (-19.55 = -20.63 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:35:22 2006