| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,055,865 – 25,056,024 |
| Length | 159 |
| Max. P | 0.656880 |
| Location | 25,055,865 – 25,055,985 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 97.50 |
| Mean single sequence MFE | -35.94 |
| Consensus MFE | -35.20 |
| Energy contribution | -35.20 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.98 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.558266 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25055865 120 - 27905053 CGAUGUGAGCAAUGCCAGGCAACUGGCCACAAUCACAACAGGUUCCCAGCGAUAAGGGGCCCGCGAUUGAUAAUCAAUUACUAAUCUACACAUGUGGUCACCCGAGCAGUGUGAUUCAUC .(.(((((.....(((((....))))).....))))).).((..(((........)))..))(..((((.....))))..).......(((((.((.((....)).)))))))....... ( -37.60) >DroSim_CAF1 10061 120 - 1 CGAUGUGAGCAAUGCCAGGCAACUGGUCACAAUCACAACAGGUUCCCAGCGAUAAGGGGCCCGCGAUUGAUAAUCAAUUACUAAUCUACGCAUGUGGGCACCCGAGCAGUGUGAUUCAUC .(.(((((.....(((((....))))).....))))).).((..(((........)))..))(..((((.....))))..).((((.((((.(((((....))..))))))))))).... ( -37.20) >DroYak_CAF1 10003 120 - 1 CGAUGUGAGCAAUGCCAGCCAACUGGACACAAUCACAACAGGUUCCCAGCGAUAAGGGGCCCGCGAUUGAUAAUCAAUUACUAAUCUACACAUGUGGGCACCCGAGCAGUGUGAUUCAUC .((((.......((((((....)))).)).(((((((...((...)).((.....((((((((((((((.....)))))..............)))))).)))..))..))))))))))) ( -33.03) >consensus CGAUGUGAGCAAUGCCAGGCAACUGGACACAAUCACAACAGGUUCCCAGCGAUAAGGGGCCCGCGAUUGAUAAUCAAUUACUAAUCUACACAUGUGGGCACCCGAGCAGUGUGAUUCAUC .(.(((((.....(((((....))))).....))))).).((..(((........)))..))(..((((.....))))..).((((.((((.(((((....))..))))))))))).... (-35.20 = -35.20 + 0.00)
| Location | 25,055,905 – 25,056,024 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 94.71 |
| Mean single sequence MFE | -35.07 |
| Consensus MFE | -32.73 |
| Energy contribution | -32.73 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.656880 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25055905 119 - 27905053 -ACGUUAUUACAGGACAUGUCGCUGCGGUCUAGAAACAAUCGAUGUGAGCAAUGCCAGGCAACUGGCCACAAUCACAACAGGUUCCCAGCGAUAAGGGGCCCGCGAUUGAUAAUCAAUUA -.(...((..(((((....)).)))..))...)...((((((.(((((.....(((((....))))).....)))))...((..(((........)))..)).))))))........... ( -38.20) >DroSim_CAF1 10101 119 - 1 -GAGUUAUUACGAGACAUCUUGCUGCGGUCUAGAAACAAUCGAUGUGAGCAAUGCCAGGCAACUGGUCACAAUCACAACAGGUUCCCAGCGAUAAGGGGCCCGCGAUUGAUAAUCAAUUA -((.((((....((((..(.....)..)))).....((((((.(((((.....(((((....))))).....)))))...((..(((........)))..)).))))))))))))..... ( -34.90) >DroYak_CAF1 10043 120 - 1 GACGUUAUUACGAGACAUCUUGCUGCGGUCUAGAAACAAUCGAUGUGAGCAAUGCCAGCCAACUGGACACAAUCACAACAGGUUCCCAGCGAUAAGGGGCCCGCGAUUGAUAAUCAAUUA (((((.....((((....))))..)).)))......((((((.(((((......((((....))))......)))))...((..(((........)))..)).))))))........... ( -32.10) >consensus _ACGUUAUUACGAGACAUCUUGCUGCGGUCUAGAAACAAUCGAUGUGAGCAAUGCCAGGCAACUGGACACAAUCACAACAGGUUCCCAGCGAUAAGGGGCCCGCGAUUGAUAAUCAAUUA ............((((...........)))).....((((((.(((((.....(((((....))))).....)))))...((..(((........)))..)).))))))........... (-32.73 = -32.73 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:35:21 2006