| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,054,461 – 25,054,571 |
| Length | 110 |
| Max. P | 0.593505 |
| Location | 25,054,461 – 25,054,571 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.71 |
| Mean single sequence MFE | -30.67 |
| Consensus MFE | -18.00 |
| Energy contribution | -18.89 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.593505 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25054461 110 + 27905053 UGGCCCACACAACUGCUCAUUCAUAUUUAUGAG---------CUAAUUAUCACUUUGCUGCUCUUGAUAGACGCGUAUAU-UAUUUAGAUAAUGUUUCUGGCGCCCAAUGUGGGGCCACA ((((((.((((...((((((........)))))---------).............((((((((....))).))..((((-(((....)))))))....)))......)))))))))).. ( -32.40) >DroSim_CAF1 8630 98 + 1 UGG------------CUCAUUCAUAUUUAUGAG---------CUAAUUAUCACUUUGCUGCACUUGAUAGACGCGUAUGU-UAGUUAGAUAAUGUUUCUGGCGCCCAACGUGGGGCCACA (((------------(((((........)))))---------)))(((((((((.(((.((.((....))..)))))...-.)))..)))))).....((((.(((.....))))))).. ( -26.50) >DroYak_CAF1 8652 120 + 1 UGGCCCACGCAACUGCUCAUUCAUAUUUAUGAGUGCACACGGCUAAUUAUCACUUUGCUGCUAUUGAUAGACUCGUAUAUUUACUUAGAUUAUGAUUCUGGCGCCCAUCGUGGGGCCACA ((((((.(((....((((((........))))))((...((((.............)))).......((((.(((((.((((....))))))))).)))))).......))))))))).. ( -33.12) >consensus UGGCCCAC_CAACUGCUCAUUCAUAUUUAUGAG_________CUAAUUAUCACUUUGCUGCUCUUGAUAGACGCGUAUAU_UACUUAGAUAAUGUUUCUGGCGCCCAACGUGGGGCCACA ((((((.........(((((........))))).................(((.(((..((......((((.((((...............)))).))))..)).))).))))))))).. (-18.00 = -18.89 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:35:19 2006