Locus 9463

Sequence ID 3R_DroMel_CAF1
Location 25,052,585 – 25,052,684
Length 99
Max. P 0.568084
window15157

overview

Window 7

Location 25,052,585 – 25,052,684
Length 99
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 82.89
Mean single sequence MFE -34.93
Consensus MFE -23.79
Energy contribution -24.43
Covariance contribution 0.64
Combinations/Pair 1.14
Mean z-score -1.75
Structure conservation index 0.68
SVM decision value 0.07
SVM RNA-class probability 0.568084
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25052585 99 + 27905053
GUGGUUCUGGAACUCCAGACGAAUCUCGUCGUGGGGAUACGAGUUCUGCCAGCUGAUCGGCGGUCGAGUGUCCCUGUAAAUCGACUUGGGGCGUAAACA
...(((((((....))))(((..((..((((.((((((((..(..(((((........))))).)..))))))))......))))..))..))).))). ( -35.60)
>DroSec_CAF1 6465 99 + 1
GUGGUUCUGGAACUCCAGACGAAUCUCGUCGUGGGGAUACGAGUUCUGCCAGCUGAUCGGCGGUCGAGUGUCCCUGUAAAUCGACUUGGGGCGUAAACA
...(((((((....))))(((..((..((((.((((((((..(..(((((........))))).)..))))))))......))))..))..))).))). ( -35.60)
>DroSim_CAF1 6789 99 + 1
GUGGUUCUGGAACUCCAGACGAAUCUCGUCGUGGGGAUACGAGUUCUGCCAGCUGAUCGGCGGUCGAGUGUCCCUGUAAAUCGACUUGGGGCGUAAACA
...(((((((....))))(((..((..((((.((((((((..(..(((((........))))).)..))))))))......))))..))..))).))). ( -35.60)
>DroEre_CAF1 6585 84 + 1
GUGGUUCUGGAACUCCAGACGAAUCUCGUCGUGGGGAUACGAGUUCUGCCAGCCGAUCGGCGGAUUAGUGUCCCUGUAAAUCGA---------------
.(((((.(((....)))((((.....))))(..(((((((....((((((........))))))...)))))))..).))))).--------------- ( -32.40)
>DroYak_CAF1 6751 93 + 1
GUGGUUCUGGAACUCCAGACGAAUCUCGUCGUGGGGAUACGAGUUCUGCCAGCUGAUCGGCGGAUUGGUGUCCCUGUGAAUCAACUUG------AAACA
.(((((((((....)))((((.....))))(..(((((((.(((.(((((........)))))))).)))))))..))))))).....------..... ( -37.60)
>DroAna_CAF1 8675 99 + 1
UUGGUUCUUAAGGUCAAGGAGUAUCUCAUCCCGAGGAUACGAGUUCUGCCAGCUGAUGGCGGAGUAAGUGUCCCUAUGGAUGGACUUGGAGUGUAAACA
...(((..((...(((((.....((.(((((...((((((...((((((((.....))))))))...))))))....))))))))))))..))..))). ( -32.80)
>consensus
GUGGUUCUGGAACUCCAGACGAAUCUCGUCGUGGGGAUACGAGUUCUGCCAGCUGAUCGGCGGUCGAGUGUCCCUGUAAAUCGACUUGGGGCGUAAACA
.....(((((....)))))........((((.((((((((.....(((((........)))))....))))))))......)))).............. (-23.79 = -24.43 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:35:15 2006