Locus 9460

Sequence ID 3R_DroMel_CAF1
Location 25,044,223 – 25,044,319
Length 96
Max. P 0.956106
window15152

overview

Window 2

Location 25,044,223 – 25,044,319
Length 96
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 91.12
Mean single sequence MFE -34.36
Consensus MFE -31.09
Energy contribution -31.05
Covariance contribution -0.04
Combinations/Pair 1.05
Mean z-score -1.60
Structure conservation index 0.90
SVM decision value 1.46
SVM RNA-class probability 0.956106
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25044223 96 + 27905053
GGGCCAUUGUUAGUGCUCCGUGGCUAGGGAUAGAUGGCUACUGUAUGGCCACUUGCUGCACGGCCAUGAAGCUACUCCUCCCACACGAUUUGCUUC
.((((((.((....))...)))))).((((.((.(((((....(((((((...........))))))).)))))))..)))).............. ( -29.70)
>DroSec_CAF1 65027 96 + 1
GGGUCAUUGUUAGUGCUCCGUGGCUAGGGCUAGAUGGCUACUGUAUGGCCACUUGCUGCACGGCCAUGGAGCUACUCCUCCCACACAAUUUGCUUC
(((.....((....(((((((((((..(((.((.((((((.....)))))))).)))....))))))))))).))....))).............. ( -38.20)
>DroSim_CAF1 59413 96 + 1
GGGCCAUUGUUAGUGCUCCGUGGCUAGGGCUAGAUGGCUACUGUAUGGCCACUUGCUGCACGGCCAUGGAGCUACUCCUCCCACACGAUUUGCUUC
(((.....((....(((((((((((..(((.((.((((((.....)))))))).)))....))))))))))).))....))).............. ( -37.50)
>DroEre_CAF1 67541 93 + 1
GGGCCAUUGUUAAGGCUCCGUGGCUGGA---UGAUGGCUACUGUAUGGCCACUUGCUGCACGGCCAUGGAGCAGCUCCUCCCACACGAUUUGCUUC
(((.....((....((((((((((((..---.(.((((((.....))))))....)....)))))))))))).))....))).............. ( -34.60)
>DroYak_CAF1 60870 90 + 1
GGGCCAUUGUUAAGGCUCCGUGGCUAGA------UGGCUACUGUAUGGCCACUUGCUGCACGGCCAUGGAGCAGCUCCUCCCACAUGAUUUGCUUC
(((.....((....(((((((((((((.------((((((.....))))))))........))))))))))).))....))).............. ( -31.80)
>consensus
GGGCCAUUGUUAGUGCUCCGUGGCUAGGG_UAGAUGGCUACUGUAUGGCCACUUGCUGCACGGCCAUGGAGCUACUCCUCCCACACGAUUUGCUUC
(((.....((....(((((((((((.........((((((.....))))))..........))))))))))).))....))).............. (-31.09 = -31.05 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:35:10 2006