Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,125,312 – 3,125,432 |
Length | 120 |
Max. P | 0.947009 |
Location | 3,125,312 – 3,125,432 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.74 |
Mean single sequence MFE | -36.80 |
Consensus MFE | -16.43 |
Energy contribution | -18.87 |
Covariance contribution | 2.44 |
Combinations/Pair | 1.21 |
Mean z-score | -2.02 |
Structure conservation index | 0.45 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.852250 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3125312 120 + 27905053 AAAGUGCUGGCGAAAGCGGGGUGUUGGGUGUUGAGGGCUGCGAUAUAGGUGUGGGCUCCACUGCUGCCCAGAAGAAGAGCAGCAGAUGAGCUGCUGGAAGUGAAGGGGUGACUGGCAAAU ......((.((....)).)).(((..(((((((.......))))))........(((((.(((((((.(.......).)))))))....(((......)))...)))))..)..)))... ( -36.40) >DroSec_CAF1 980 119 + 1 AAAGUGCUGGCAAAAGCGGGG-GUUGGGAGUUGGGGGCUGCGAUUUAGGGGUGGGCUCCACCGCUGCCCAGAAGAAGCGCAGCAGAUGAGCUGCUGGAAGUGAAGGGGUGUCUGGCAAAG ....(((..(((...((....-.(((((((((((((.(..(.........)..).)))))..))).))))).....)).((((((.....))))))............)).)..)))... ( -40.50) >DroSim_CAF1 1390 119 + 1 AAAGUGCUGGCAAAAGCGGGG-GUUAGGUGUUGGGGGCUGCGAUUUAGGGGUGGGCUCCACCGCUGCCCAGAAGAAGCGCAGCAGAUGAGCUGUUGGAAGUGAAGGGGUGGCUGGCAAAU ....(((..((...(((((..-.........(((((.(..(.........)..).))))))))))((((........(.((((((.....)))))))........)))).))..)))... ( -40.89) >DroEre_CAF1 1105 112 + 1 AAAGUGCAGGAGAAUG--GGG-GUUGGAUGUUGGCGGGGG-----UGGGGGUGUUCUCCACCCCGGCGCAGAAGAAUAGCGGCAGAUGAGCUGCUGGAAUCGAAGGGGUGGUUGGCAAAU ................--...-......(((..((.((((-----(((((.....))))))))).((.(....((.(((((((......)))))))...))....).)).))..)))... ( -39.70) >DroYak_CAF1 1217 93 + 1 AAAGUGCAGGAGAAAG--GUG-GUAGGAUGUU----------------------ACUCCACUCCUG--CCGAAGAAUAGCAGCAGAUAAGCUGAUGGAAUCGAAGGGAGUUUUGGCAAAU ....(((.((((.((.--((.-.....)).))----------------------.))))((((((.--.(((.......((((......))))......)))..))))))....)))... ( -26.52) >consensus AAAGUGCUGGCGAAAGCGGGG_GUUGGGUGUUGGGGGCUGCGAU_UAGGGGUGGGCUCCACCGCUGCCCAGAAGAAGAGCAGCAGAUGAGCUGCUGGAAGUGAAGGGGUGGCUGGCAAAU ....(((..(....(((((............(((((.((((.........)))).))))))))))((((..........((((((.....)))))).........))))..)..)))... (-16.43 = -18.87 + 2.44)
Location | 3,125,312 – 3,125,432 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.74 |
Mean single sequence MFE | -25.16 |
Consensus MFE | -11.84 |
Energy contribution | -12.72 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.25 |
Mean z-score | -2.19 |
Structure conservation index | 0.47 |
SVM decision value | 1.37 |
SVM RNA-class probability | 0.947009 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3125312 120 - 27905053 AUUUGCCAGUCACCCCUUCACUUCCAGCAGCUCAUCUGCUGCUCUUCUUCUGGGCAGCAGUGGAGCCCACACCUAUAUCGCAGCCCUCAACACCCAACACCCCGCUUUCGCCAGCACUUU ..((((.(((.........))).......((((..(((((((((.......)))))))))..)))).............))))....................(((......)))..... ( -25.80) >DroSec_CAF1 980 119 - 1 CUUUGCCAGACACCCCUUCACUUCCAGCAGCUCAUCUGCUGCGCUUCUUCUGGGCAGCGGUGGAGCCCACCCCUAAAUCGCAGCCCCCAACUCCCAAC-CCCCGCUUUUGCCAGCACUUU ..........................(((((......)))))(((......((((.(((((..((.......))..))))).))))............-....((....)).)))..... ( -27.80) >DroSim_CAF1 1390 119 - 1 AUUUGCCAGCCACCCCUUCACUUCCAACAGCUCAUCUGCUGCGCUUCUUCUGGGCAGCGGUGGAGCCCACCCCUAAAUCGCAGCCCCCAACACCUAAC-CCCCGCUUUUGCCAGCACUUU ...(((..((.................((((......))))..........((((.(((((..((.......))..))))).))))............-..........))..))).... ( -23.90) >DroEre_CAF1 1105 112 - 1 AUUUGCCAACCACCCCUUCGAUUCCAGCAGCUCAUCUGCCGCUAUUCUUCUGCGCCGGGGUGGAGAACACCCCCA-----CCCCCGCCAACAUCCAAC-CCC--CAUUCUCCUGCACUUU ...(((...................(((.((......)).))).......((.((.(((((((.(......))))-----)))).)))).........-...--.........))).... ( -25.60) >DroYak_CAF1 1217 93 - 1 AUUUGCCAAAACUCCCUUCGAUUCCAUCAGCUUAUCUGCUGCUAUUCUUCGG--CAGGAGUGGAGU----------------------AACAUCCUAC-CAC--CUUUCUCCUGCACUUU ..................(((......((((......)))).......)))(--((((((.((.((----------------------(......)))-..)--)...)))))))..... ( -22.72) >consensus AUUUGCCAGACACCCCUUCACUUCCAGCAGCUCAUCUGCUGCUCUUCUUCUGGGCAGCGGUGGAGCCCACCCCUA_AUCGCAGCCCCCAACACCCAAC_CCCCGCUUUCGCCAGCACUUU .............................((((..(((((((.(.......).)))))))..))))...................................................... (-11.84 = -12.72 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:16 2006