Locus 9458

Sequence ID 3R_DroMel_CAF1
Location 25,042,055 – 25,042,155
Length 100
Max. P 0.866395
window15147

overview

Window 7

Location 25,042,055 – 25,042,155
Length 100
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 78.02
Mean single sequence MFE -23.18
Consensus MFE -14.18
Energy contribution -14.90
Covariance contribution 0.72
Combinations/Pair 1.12
Mean z-score -1.88
Structure conservation index 0.61
SVM decision value 0.85
SVM RNA-class probability 0.866395
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25042055 100 - 27905053
GUCUUCUCAGAAUUUGGUAUUUCAGCAAUUUGUUCCGGUAGAAACCGGAGCAAAAAGUCAAGUUAGGGAGGCGGAACUACA--GAGGAAUA------UAA-CAAAAAAG
(((((((...((((((((......))..(((((((((((....)))))))))))....)))))).))))))).........--........------...-........ ( -27.80)
>DroSec_CAF1 62864 98 - 1
GUCUUCUCAGAAUUCGGUAUUUCAGCAAUUUGUUCCGGUAGAAACCGGAGGA-AAAGUCAAGUUAGGGAGGCGGAACUACA--GAAGAACA------GAA--AAAAAAG
.((((((...(.(((.((.(..((((..(((.(((((((....))))))).)-))......))).)..).)).))).)..)--)))))...------...--....... ( -22.80)
>DroSim_CAF1 57238 98 - 1
GUCUUCUCAGAAUUCGGUAUUUCAGCAAUUUGUUCCGGUAGAAACCGGAGGA-AAAGUCAAGUUAGGGAGGCGGAACUACA--GAAGAACA------GAA--AAAAAAG
.((((((...(.(((.((.(..((((..(((.(((((((....))))))).)-))......))).)..).)).))).)..)--)))))...------...--....... ( -22.80)
>DroEre_CAF1 65360 92 - 1
GUCUUCUCAGAAUUUGGUAUUUCAGCAAUUUGUUCCGGUAGAAACCGGAGAA-AAAGUAAAGCUAGGGAGGCGGAACUACA--GAAAAAU-------G-------AAAG
((((((..((..((((.(.((((.((.....))((((((....)))))))))-).).)))).))..)))))).........--.......-------.-------.... ( -21.50)
>DroYak_CAF1 58679 106 - 1
GUCUUCUCAGAAUUUGGUAUUUCAGCAAUUUGUUCCGGUAGAAACCGGAGAA-AAACUCAACUUAGGGAGGCGGAACUACA--GAAAAACUACAAAAGAAAGAAUAAAA
(((((((...((.(((((.((((.((.....))((((((....)))))))))-).)).))).)).))))))).........--.......................... ( -21.00)
>DroPer_CAF1 72604 82 - 1
GUCUUCCCAGAAUU------UCCAGCAAUUUGUUCCGGCAGAAACCCAACCG-AG---------AGAGGGGCGGAGCAGGAACGAAGAGGA------GGA--AACA---
.(((((((.(....------..).....((((((((.((.....(((...(.-..---------.)..)))....)).))))))))).)))------)))--....--- ( -23.20)
>consensus
GUCUUCUCAGAAUUUGGUAUUUCAGCAAUUUGUUCCGGUAGAAACCGGAGAA_AAAGUCAAGUUAGGGAGGCGGAACUACA__GAAGAACA______GAA__AAAAAAG
(((((((..(((........))).........(((((((....)))))))...............)))))))..................................... (-14.18 = -14.90 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:35:06 2006