Locus 9455

Sequence ID 3R_DroMel_CAF1
Location 25,038,039 – 25,038,130
Length 91
Max. P 0.824527
window15140

overview

Window 0

Location 25,038,039 – 25,038,130
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 98.68
Mean single sequence MFE -16.62
Consensus MFE -16.54
Energy contribution -16.58
Covariance contribution 0.04
Combinations/Pair 1.05
Mean z-score -1.33
Structure conservation index 1.00
SVM decision value 0.69
SVM RNA-class probability 0.824527
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25038039 91 - 27905053
AUAUUUAAAUUGCUUGGCCGGCCUGUCUAAACAGUCCAAAAACAGCGAGAGGAUCGCUGAAAGAAAUACGAAAAAUGGAGAAAAUAAAAAC
...(((..(((..(((...((.((((....)))).)).....((((((.....)))))).........)))..)))..))).......... ( -17.50)
>DroSec_CAF1 58878 91 - 1
AUAUUUAAAUUGCUUGGCCGGCCUGUCUAAACAGUCCAAAAACAGCGAGAGGAUCGCUGAAAGAAAUACGAAAAAUGGGGAAAAUAAAAAG
...(((..(((..(((...((.((((....)))).)).....((((((.....)))))).........)))..)))..))).......... ( -17.40)
>DroSim_CAF1 53213 91 - 1
AUAUUUAAAUUGCUUGGCCGGCCUGUCUAAACAGUCCAAAAACAGCGAGAGGAUCGCUGAAAGAAAUACGAAAAAUGGGGAAAAUAAAAAC
...(((..(((..(((...((.((((....)))).)).....((((((.....)))))).........)))..)))..))).......... ( -17.40)
>DroEre_CAF1 61163 91 - 1
AUAUUUAAAUUGCUUGGCCGGCCUGUCUAAACAGUCCAAAAACAGCGAGAGGAUCGCCGAAAGAAAUACGAAAAAUGGGGAAAAUAAAAAC
.................((((.((((....)))).)).....((((((.....))))(....)............))))............ ( -13.40)
>DroYak_CAF1 54512 91 - 1
AUAUUUAAAUUGCUUGGCCGGCCUGUCUAAACAGUCCAAAAACAGCGAGAGGAUCGCUGAAAGAAAUACGAAAAAUGGGGAAAAUAAAAAC
...(((..(((..(((...((.((((....)))).)).....((((((.....)))))).........)))..)))..))).......... ( -17.40)
>consensus
AUAUUUAAAUUGCUUGGCCGGCCUGUCUAAACAGUCCAAAAACAGCGAGAGGAUCGCUGAAAGAAAUACGAAAAAUGGGGAAAAUAAAAAC
...(((..(((..(((...((.((((....)))).)).....((((((.....)))))).........)))..)))..))).......... (-16.54 = -16.58 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:35:00 2006