| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,037,694 – 25,037,794 |
| Length | 100 |
| Max. P | 0.500000 |
| Location | 25,037,694 – 25,037,794 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 83.49 |
| Mean single sequence MFE | -23.54 |
| Consensus MFE | -15.20 |
| Energy contribution | -15.44 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.65 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25037694 100 - 27905053 GCACGGCCAAGAGCCAUUCUAAACGACAGGCGGUGGUAACAUGACCGUGCACCAAAAAAAAAAAAAAUUGAUUUAUUUUGGGCAAGAGUACUAUUAAAUG (((((((((...(((..((.....))..)))..)))........)))))).((((((.(((..........))).))))))................... ( -21.40) >DroSec_CAF1 58531 94 - 1 GCACGGCCAAGAGCCAUCCUAAACGACUGGCGGUGGUAACAUGGCCGUGCACCAAAAA------AAAUGGAUUACUUUUGGGCAAGAGUACUAUUAAAUG (((((((((...(((((((((......))).))))))....)))))))))........------.(((((..(((((((....))))))))))))..... ( -34.60) >DroSim_CAF1 52873 81 - 1 GCACGGCCAAGAGCCAUCCUAAACGACAGGCGGUGGUAACAUGACCGUGCACCAAAAA------AAAUGGAUUAU-------------UACUAUUAAAUG ((((((.((...((((((((........)).))))))....)).)))))).(((....------...))).....-------------............ ( -21.40) >DroEre_CAF1 60776 93 - 1 GCG-AGCCAAGAGCCAUCCUAAACGACAGGCGGUGGUAACAUGACCGUGCACCAAAAG------AAAUGGAUUAUUUUGGGGCAAGAAUGCCAUCAAAUG ..(-(.((((((((((((((........)).)))))).......((((..........------..))))....))))))((((....)))).))..... ( -21.50) >DroYak_CAF1 54160 93 - 1 GCG-AGCCAAGAGCCAUCUUAAACGACAGGCGGUGGUAACAUGACCGUGCACCAAAAG------AAAUGGAUUAUUUUGGGGCAAGAACACCAUCAAAUG ...-.(((((((....))))........)))((((((.((......))((.((((((.------..........)))))).))......))))))..... ( -18.80) >consensus GCACGGCCAAGAGCCAUCCUAAACGACAGGCGGUGGUAACAUGACCGUGCACCAAAAA______AAAUGGAUUAUUUUGGGGCAAGAAUACUAUUAAAUG ((((((.((...((((((((........)).))))))....)).)))))).................................................. (-15.20 = -15.44 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:34:59 2006