Locus 9451

Sequence ID 3R_DroMel_CAF1
Location 25,032,188 – 25,032,288
Length 100
Max. P 0.586730
window15133

overview

Window 3

Location 25,032,188 – 25,032,288
Length 100
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 85.73
Mean single sequence MFE -18.07
Consensus MFE -12.56
Energy contribution -13.84
Covariance contribution 1.28
Combinations/Pair 1.24
Mean z-score -1.76
Structure conservation index 0.69
SVM decision value 0.11
SVM RNA-class probability 0.586730
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25032188 100 + 27905053
AAUCGC-UAUUAGCAAUUACAC-CUUUAGGCAUGCUUAUAAAUAUAUG-AUUUCCAAUUGAUUUGUAUUUAUAAACUGCAUUGCUUAAACUGAACUACAAAGC
..((((-.....))........-.((((((((((((((((((((((.(-(((.......)))))))))))))))...))).))))))))..)).......... ( -18.70)
>DroSec_CAF1 53101 101 + 1
AAUCGC-UGUUAGCAAUUAAACUCUUUAAGCUAGUUUAUAAAUAUAUG-AUUUCCAAUUGAUUUGUAUUUAUAAGCUGCAUUGCUUAAACUGAACUACAAAGC
....((-.....)).......(..((((((((((((((((((((((.(-(((.......)))))))))))))))))))....)))))))..)........... ( -20.40)
>DroSim_CAF1 47463 101 + 1
AAUCGC-UGUUAGCAAUUACACUCUUUAAGCUAGUUUAUAAAUAUAUG-AUUUGCAAUUGAUUUGUAUUUAUAAGCUGCAUUGCUUAAACUGAACUACAAAGC
....((-.....)).......(..((((((((((((((((((((((.(-(((.......)))))))))))))))))))....)))))))..)........... ( -20.40)
>DroEre_CAF1 55309 99 + 1
AAUCCCUUGCUAGCGAUUGCAC--UUUAAGCAAGUUU--AAAUAUAUAUUUCUUCAAUUGAUUUGUAUUUAUAAGCUUUAUUGCUAGAACUGAACUACAAAUC
.........((((((((.((..--.....))((((((--(...(((((..((.......))..)))))...))))))).))))))))................ ( -18.10)
>DroYak_CAF1 48406 103 + 1
AAUCCCUUGUUAGCAAUUACACUCUUUAAGCUAGCUUAUAAAUAUAUAUGUUUUCAAUUGAUUGGUAUUUAUAAACUUUAUUGCUCAGACUGAACUACAUAGC
........((((((...............))))))...........(((((.((((.((((..((((...........))))..))))..))))..))))).. ( -12.76)
>consensus
AAUCGC_UGUUAGCAAUUACACUCUUUAAGCUAGUUUAUAAAUAUAUG_AUUUCCAAUUGAUUUGUAUUUAUAAGCUGCAUUGCUUAAACUGAACUACAAAGC
........................((((((((((((((((((((((...(((.......))).)))))))))))))))....))))))).............. (-12.56 = -13.84 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:34:55 2006