Locus 9450

Sequence ID 3R_DroMel_CAF1
Location 25,031,364 – 25,031,481
Length 117
Max. P 0.981576
window15132

overview

Window 2

Location 25,031,364 – 25,031,481
Length 117
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 71.21
Mean single sequence MFE -26.16
Consensus MFE -9.06
Energy contribution -9.46
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -2.26
Structure conservation index 0.35
SVM decision value 1.89
SVM RNA-class probability 0.981576
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25031364 117 - 27905053
GUGCAGUUACUCCUUUGAUAAAUACGAGCAAUUUGGGAAAAAAGGAUUGCAACACAUCCU-UCGCUGUU--AAGUGGAGAAAUAUGCAGAUUCCAAUUAAUCACAAUACCACUGCAUUUC
(((((((...((((((..(((((.......))))).....))))))(((((.......((-(((((...--.))))))).....))))).....................)))))))... ( -24.70)
>DroSec_CAF1 52293 91 - 1
GUGCAGUUACUCCUGUGAUAAAUACGAGCAAUUUGGGAA-AAAGGAUUGCAACACAUCCUUUCUCUGUU--AAGCAGAGAAAUAAAGAAACUAU--------------------------
(((..(((((....)))))........(((((((.....-...)))))))..)))....((((((((..--...))))))))............-------------------------- ( -21.20)
>DroSim_CAF1 46636 117 - 1
GUGCAGUUACUCCUGUGAUAAAUACGAGCAAUUUGGGAA-AAAGGAUUGCAACACAUCCUUUCUCUGUU--AAGCAGAGAAAUAUGCAGAUUCCAAUUAAUCACAGUACCACUGCAUUUC
(((((((.....(((((((.(((....(((((((.....-...)))))))....(((..((((((((..--...)))))))).))).........))).)))))))....)))))))... ( -33.80)
>DroEre_CAF1 54484 118 - 1
GUGCAGAUACUG-UGUGAUAAAUAUGAGCAAUUUGGGAA-AACGGAUUGCACCACAUUCCUUUGCUGUUAUAAGUAGAAAAAUAUGCAGAUUACAAUUAGUCACAACAGUGCUACAUUUU
(((.((.(((((-((((((.(((.((.((((((((....-..))))))))..((.(((..((((((......))))))..))).)).......))))).))))).)))))))).)))... ( -29.30)
>DroYak_CAF1 47599 95 - 1
GUGCGGUUACUG-UGUGAUAAAUAUAAGCAAUUUGGGAA-AACGGAUUGCAACACAUUCUUUUGCUGUU-----------------------ACAAUUAGUCACAACACGAUUAAAUUUC
(((..((.((((-(((((((.......((((((((....-..))))))))....((......)).))))-----------------------)))..)))).))..)))........... ( -21.80)
>consensus
GUGCAGUUACUCCUGUGAUAAAUACGAGCAAUUUGGGAA_AAAGGAUUGCAACACAUCCUUUCGCUGUU__AAGCAGAGAAAUAUGCAGAUUACAAUUAAUCACAACACCACUACAUUUC
(((..(((((....)))))........(((((((.........)))))))..)))................................................................. ( -9.06 =  -9.46 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:34:54 2006