Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,125,098 – 3,125,213 |
Length | 115 |
Max. P | 0.983291 |
Location | 3,125,098 – 3,125,213 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.76 |
Mean single sequence MFE | -26.82 |
Consensus MFE | -23.86 |
Energy contribution | -24.10 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.76 |
Structure conservation index | 0.89 |
SVM decision value | 1.94 |
SVM RNA-class probability | 0.983291 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3125098 115 + 27905053 ---AGCAGAGCGUUUUGCUGGAAAUUCGCAGAAGGAGCAGCGGCAAAAGCAA--AACAAAAAAAGGUAAUAAGGUCGAAGGAAGGGGAAACUCAAAAGGAUUUUUUCAGCGUCGCGUCUG ---..(((((((...(((((((((.((((.......)).((.......))..--....................((....)).(((....))).....))..))))))))).))).)))) ( -27.80) >DroSec_CAF1 794 120 + 1 AAGAGCAGAGAGUUUUGCUGGAAAUUCGCAGAAGGAGCAGAGGCAAAAGCAAAAAACAAAAAAAGGUAAAAAGGUCGAAGGAAGGGGAAACUCAAAAGGAUUUUUUCAGCGUCGCGUCUG .....((((..((..(((((((((.((((.......))....((....))........................((....)).(((....))).....))..)))))))))..)).)))) ( -24.30) >DroSim_CAF1 1163 120 + 1 AAGAGCAGAGCGUUUUGCUGGAAAUUCGCAGAAGGAGCAGCGGCAAAAGCAAAAAACAAAAAAAGGUAAAAAGGUCGAAGGAAGGGGAAACUCAAAAGGAUUUUUUCAGCGUCGCGUCUG .....(((((((...(((((((((.((((.......)).((.......))........................((....)).(((....))).....))..))))))))).))).)))) ( -27.80) >DroEre_CAF1 880 114 + 1 ---AGCGGAGCGUUUUGCUGGAAAUUCGCAGAAGGAGCAGCGGCAGAAACAA--AACAAAAAAAGGUAAAAAGGUCGAAGGAAGGGGAAACUCAA-AGGAUUUUUUCAGCGUCGCGUCUG ---.(((..((.((((((((....(((......)))....))))))))....--......(((((((.......((....)).(((....)))..-...)))))))..))..)))..... ( -27.50) >DroYak_CAF1 1005 114 + 1 ---AGCAGAGAGUUCUGCUGGAAAUUCGCAGAAGGAGCAGCGGCAAAAACAA--AACUAA-AAAGGUAAAAAGGUCGAAGGAAGGGGAAACUCAAAAGGAUUUUUUCAGCGUCGCGUCUG ---..((((..(((((.((((.....).)))..))))).(((((........--.(((..-...)))......((.((((((((((....))).......))))))).))))))).)))) ( -26.71) >consensus ___AGCAGAGCGUUUUGCUGGAAAUUCGCAGAAGGAGCAGCGGCAAAAGCAA__AACAAAAAAAGGUAAAAAGGUCGAAGGAAGGGGAAACUCAAAAGGAUUUUUUCAGCGUCGCGUCUG .....(((((((...(((((((((.((.........((....))..............................((....)).(((....))).....))..))))))))).))).)))) (-23.86 = -24.10 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:14 2006