| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,023,114 – 25,023,214 |
| Length | 100 |
| Max. P | 0.976525 |
| Location | 25,023,114 – 25,023,214 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 71.43 |
| Mean single sequence MFE | -30.84 |
| Consensus MFE | -21.74 |
| Energy contribution | -21.46 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.70 |
| SVM decision value | 1.77 |
| SVM RNA-class probability | 0.976525 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25023114 100 - 27905053 AGACAUGGGCGGGCGGUUCAAGUGGACAGAUAGCCACAGUCGGGGGUGUUUGAAUAGGAGCGUUUAGCUAUCCA------------AGAA-A---GCCAGCUAUUGGAGAAGUCAG- ...((..(((.(((..(((...((((((((((.((........)).))))))......(((.....))).))))------------.)))-.---))).)))..))..........- ( -27.40) >DroSec_CAF1 44119 100 - 1 AGACAUGGGCGGGCGGUCCAAGUGGAUAGAUAGCCACAGUCGGGGGUAGUUAAAUAGGAGCGUUUAGCUAUCCA------------AGAA-A---GCCAGUUAUUGGGGAAGUCAG- .(((.(((((...(.((((....)))).)...))).)).((..((((((((((((......)))))))))))).------------.)).-.---.((((...))))....)))..- ( -31.70) >DroSim_CAF1 38430 100 - 1 AGACAUGGGCGGGCGGUCCAAGUGGAUAGAUAACCACAGUCGGGGGUGGCUAAAUAGGAGCGUUUAGCUAUCCA------------AGAA-A---GCCAGUUAUUGGGGAAGUCAG- .(((.(((((.....))))).((((........))))..((..((((((((((((......)))))))))))).------------.)).-.---.((((...))))....)))..- ( -33.10) >DroEre_CAF1 46179 109 - 1 AGACAUGGGCGGGCGGUCAAAAUCGCUGGGUAGCCACAGUUGGGGAUGCUGAAAUAGG-A----UUGGUAUCCGG--UGAGUUACAAAUAUAUGUGGCAGUUAUGGGACAAGUCAG- .(((.(((.(.((((((....)))))).).).((((((.....((((((..(......-.----)..))))))(.--.......).......))))))..........)).)))..- ( -32.40) >DroYak_CAF1 38344 106 - 1 AGACAUGGGCGGGCGGUCCCAGUCGGUGGAUAGCCACAGUCGGGGAUGCUGAAAUAGGCA----UGGGUAUCUGGGAUAAGUUGCAAAAAUAUCUGGC-------GAACAGGUUAGA ........((((...(((((((...((((....))))........(((((......))))----)......)))))))...)))).......((((((-------......)))))) ( -29.60) >consensus AGACAUGGGCGGGCGGUCCAAGUGGAUAGAUAGCCACAGUCGGGGGUGCUUAAAUAGGAGCGUUUAGCUAUCCA____________AGAA_A___GCCAGUUAUUGGAGAAGUCAG_ .(((...(((.(((.(((..........))).)))...)))..((((((((((((......))))))))))))......................................)))... (-21.74 = -21.46 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:34:53 2006