| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,018,987 – 25,019,090 |
| Length | 103 |
| Max. P | 0.506383 |
| Location | 25,018,987 – 25,019,090 |
|---|---|
| Length | 103 |
| Sequences | 4 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 90.43 |
| Mean single sequence MFE | -25.73 |
| Consensus MFE | -20.10 |
| Energy contribution | -20.48 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.78 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.506383 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25018987 103 - 27905053 UUCACAAUCACAUCGCGUGGCAUAUCCAUAGGCGUAAGGAUACGGCAUAGGCACAUGGUCUGGCCUCCACUCACACCAUCACAC---UCGCCUU-GCCACACAUAUA---- ..............(.((((((.......(((((((....)))(((.(((((.....))))))))...................---..)))))-))))).).....---- ( -25.71) >DroSec_CAF1 40167 107 - 1 UUCACAAUCACAUCGCGUGGCAUAUCCAUAGGCGUAAGGAUGCGGCAUAGGC-CAUGGUCUGGCCUCCACUCACACCAGCACACACCUCGCCUU-GCCACACACACA--GG ..............(.((((((.......(((((..(((.((((((....))-).((((.(((.......))).)))))))....)))))))))-))))).).....--.. ( -30.91) >DroSim_CAF1 34289 105 - 1 UUCACAAUCACAUCGCGUGGCAUAUCCAUAGGCGUAAGGAUACGGCAUAGGCACAUGGUCUGGCCUCCACUCACACCAGCACAC---UCGCCUU-GCCACACACACA--CA ..............(.((((((.......(((((...(((...(((.(((((.....))))))))))).((......)).....---.))))))-))))).).....--.. ( -26.71) >DroYak_CAF1 34058 108 - 1 UUCACAAUCACAUCGCGUGGCACAUCCAUAGGCGUAAGGAUACGGCAUAGGCACAUGGUCUGGCCUCCACUCACACCAUCGCAC---UCGUCCUUUACACACACACACACA ..............((((((...((((..........))))..(((.(((((.....))))))))..........))).)))..---........................ ( -19.60) >consensus UUCACAAUCACAUCGCGUGGCAUAUCCAUAGGCGUAAGGAUACGGCAUAGGCACAUGGUCUGGCCUCCACUCACACCAGCACAC___UCGCCUU_GCCACACACACA__CA ..............(.(((((........(((((((....)))(((.(((((.....))))))))........................))))..))))).)......... (-20.10 = -20.48 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:34:52 2006