| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,015,677 – 25,015,770 |
| Length | 93 |
| Max. P | 0.533463 |
| Location | 25,015,677 – 25,015,770 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 86.10 |
| Mean single sequence MFE | -21.60 |
| Consensus MFE | -16.65 |
| Energy contribution | -16.52 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.77 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.533463 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25015677 93 + 27905053 ACAGCUUGCAGCUGUCAUAUAUAUUUCGAUGUGCAAAUGCCACAUAACAAUUGUGUGCACUAUCACUAUCAUAUGCCCCA--UCUGUGCUGCUGC- .((((..((((.((.((((((((....((((((((.....((((.......))))))))).)))..))).)))))...))--.))))...)))).- ( -21.70) >DroSec_CAF1 36785 91 + 1 ACAGCUUGCAGCUGUCAUAUAUAUUUCGAUGUGCAAAUGCCACAUAACAAUUGUGUGCACUAUCACU--CAUGCGCCCCA--UCUGUGCGGUUGC- .......((((((..............((((((((.....((((.......))))))))).)))...--...((((....--...))))))))))- ( -21.20) >DroSim_CAF1 30930 79 + 1 ACAGCUUGCAGCUGUCAUAUAUAUUUCGAUGUGCAAAUGCCACAUAACAAUUGUGUGCACUAU--------------CCA--UCUGUGCGGUUGC- .......(((((((.((((........((((.(....(((((((.......)))).)))....--------------)))--)))))))))))))- ( -19.70) >DroYak_CAF1 30658 94 + 1 ACAGCUUGCAGCUGUCAUAUAGAUUUCGAUGUGCAAAUGCCACAUAACAAUUGUGUGCAAUAUCACC--CAUACGCCCCGUGUCCGUGUGGUUGCU (((((.....))))).................((((.(((((((.......)))).))).......(--((((((.........))))))))))). ( -23.80) >consensus ACAGCUUGCAGCUGUCAUAUAUAUUUCGAUGUGCAAAUGCCACAUAACAAUUGUGUGCACUAUCACU__CAUACGCCCCA__UCUGUGCGGUUGC_ .......(((((((((((((........)))))....(((((((.......)))).)))............................)))))))). (-16.65 = -16.52 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:34:49 2006