Locus 9444

Sequence ID 3R_DroMel_CAF1
Location 25,012,145 – 25,012,264
Length 119
Max. P 0.858017
window15124

overview

Window 4

Location 25,012,145 – 25,012,264
Length 119
Sequences 3
Columns 119
Reading direction reverse
Mean pairwise identity 85.43
Mean single sequence MFE -27.53
Consensus MFE -21.04
Energy contribution -20.93
Covariance contribution -0.10
Combinations/Pair 1.15
Mean z-score -2.43
Structure conservation index 0.76
SVM decision value 0.82
SVM RNA-class probability 0.858017
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25012145 119 - 27905053
ACGUAAAAAAAAGUGUGUCUUAUGGUUUUAAGUCACAUUUUGGCCAAGUUAGAGCUCUAAAACCCCUUAAAAAGGAGGUAUUUUGGCUAAAAAAAUGAAAAUAUUAAUCGGAAAAUGUA
((((.....((((((((.((((......)))).))))))))(((((((((((....)))).((((((.....))).)))..)))))))..........................)))). ( -27.90)
>DroSim_CAF1 27384 119 - 1
ACGUAAAAAAAAGUGUGUCUUAUGGUUUUAAGUCACAUUUUGGCCAAGUUAGAGCUUGAAAAUCCCUUGAAAAAGAGGUAUUUUGGCCAUAUAAAUGAAAAUAUGAAUCGGAAAACGUA
((((.....((((((((.((((......)))).))))))))((((((((....)))).((((((((((....))).)).)))))))))..........................)))). ( -30.20)
>DroYak_CAF1 27031 119 - 1
CUGUAAAAAAAAGUGUGUCUUAUGGUUUUAAGUCUCAUUUUGGCCAAGUUAGAGCUCAUCGACCGCUUGAAAAUGAGGUUUUUUGGUCAUAAAAAUUAAAAUAUUGAUACGAAAGUGCA
.........((((((.(.((((......)))).).))))))(((((((..(((.((((((((....))))...)))).))))))))))................((.(((....))))) ( -24.50)
>consensus
ACGUAAAAAAAAGUGUGUCUUAUGGUUUUAAGUCACAUUUUGGCCAAGUUAGAGCUCAAAAACCCCUUGAAAAAGAGGUAUUUUGGCCAUAAAAAUGAAAAUAUUAAUCGGAAAAUGUA
.........((((((((.((((......)))).))))))))((((((((....))......(((.(((....))).)))...))))))............................... (-21.04 = -20.93 +  -0.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:34:47 2006