Locus 9443

Sequence ID 3R_DroMel_CAF1
Location 25,010,384 – 25,010,491
Length 107
Max. P 0.902584
window15123

overview

Window 3

Location 25,010,384 – 25,010,491
Length 107
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 76.03
Mean single sequence MFE -29.45
Consensus MFE -13.23
Energy contribution -14.23
Covariance contribution 1.00
Combinations/Pair 1.22
Mean z-score -2.32
Structure conservation index 0.45
SVM decision value 1.03
SVM RNA-class probability 0.902584
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25010384 107 + 27905053
AACAACAAUGCAUAGCCAAACAUGGCUAAGCCAAACAAUAGGUCCUUCCACAUGGAAAAGCCGUCGGAACGAGGGCAAACAGCGCCAGUCCAAGUGGGCUUGAGCUA
.........((.((((((....)))))).))..............((((....))))..(((.(((...))).)))....(((.(.(((((....))))).).))). ( -32.50)
>DroPse_CAF1 33099 83 + 1
AACAACAAUGCG--------CUGGGCAUAGCCAAACAAUGGC------------GAAAGGCUUCGAGAGCGAGGGCAAACAAAGCGAGCCCAAGUGAGCUU----UU
..........((--------((((((...((((.....))))------------....(.(((((....))))).)...........)))).)))).....----.. ( -25.50)
>DroSim_CAF1 26862 107 + 1
AACAACAAUGCAUAGCCAAACAUGGCUAAGCCAAACAAUAGGUCCCUCCACAUGGAAAAGCCGUCGGAACGAGGGCAAACAGCGCCAGUCCAAGUGGGCUCGAGCUC
.........((.((((((....)))))).))...............(((....)))...(((.(((...))).)))....(((.(.(((((....))))).).))). ( -31.00)
>DroEre_CAF1 34579 107 + 1
ACCAACAAUGCAUAGCCAAACAUGGCUAAGCCAAACAAUAGGUCCUUCCACAUGGAAAAGCCGUCGGAACGAGGGCAAACAGCGCCAGUCCAAGUGGGCUUGAGCUC
.((.((...((.((((((....)))))).)).........(((..((((....))))..))))).))...((((((.......)))(((((....)))))....))) ( -32.90)
>DroYak_CAF1 26489 107 + 1
ACCAACAAUGCAUAGCCAAACAUGGCUAAGCCAAACAAUAGGUCCUUCCACAUGGAAAAGCCGACGGAACGAGGGCAAACAGCGCCAGUCCAAGUGGGCUUGAGCUC
.((......((.((((((....)))))).)).........(((..((((....))))..)))...))...((((((.......)))(((((....)))))....))) ( -31.80)
>DroPer_CAF1 42863 83 + 1
AACAACAAUGCG--------CUGGGCAUAGCCAAACAAUGGC------------GAAAGGCUUCGAGAGCGAGGACAAACAAAGCGAGCCCAAGUGAGCUU----UU
..........((--------((((((...((((.....))))------------....(.(((((....))))).)...........)))).)))).....----.. ( -23.00)
>consensus
AACAACAAUGCAUAGCCAAACAUGGCUAAGCCAAACAAUAGGUCCUUCCACAUGGAAAAGCCGUCGGAACGAGGGCAAACAGCGCCAGUCCAAGUGGGCUUGAGCUC
.........((.(((((......))))).))..........................(((((......((..((((...........))))..)).)))))...... (-13.23 = -14.23 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:34:46 2006