Locus 9439

Sequence ID 3R_DroMel_CAF1
Location 25,006,329 – 25,006,429
Length 100
Max. P 0.525030
window15117

overview

Window 7

Location 25,006,329 – 25,006,429
Length 100
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 81.36
Mean single sequence MFE -24.56
Consensus MFE -14.20
Energy contribution -15.20
Covariance contribution 1.00
Combinations/Pair 1.11
Mean z-score -1.82
Structure conservation index 0.58
SVM decision value -0.02
SVM RNA-class probability 0.525030
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25006329 100 + 27905053
AAAAGCUUUUGAGCAAAUGGGCUAGGAAAUUGUAUAAAGCAUUCCUGUCUGACAGUCAGUAAGUCCCUCUAAGGCGUUCAGCUUCUUCGAGAGUUU-AUUA
..(((((((((((.....((((((((((..(((.....))))))))..(((.....)))..))))).....((((.....)))).)))))))))))-.... ( -24.60)
>DroSec_CAF1 28783 101 + 1
AAAAGCUUUUGAGCAAAUGGGCUAGGAAAUUGUAUAAAGCAUUCCUGUCUGACAGUCAGAAAGUCCCUUUAAGGCAUUCAGCUUCUUCGAGAGUUUUUUUA
(((((((((((((.(((.((((((((((..(((.....)))))))).((((.....)))).))))).))).((((.....)))).)))))))))))))... ( -27.40)
>DroSim_CAF1 22883 100 + 1
AAAAGCUUUUGAGCAAAUGGGCUAGGAAAUUGUAUAAAGCAUUCCUGUCUGACAGUCAGAAAGUCCCUUUAAGGCAUUCAGCUUCUUCGAGAGUUU-AUUA
..(((((((((((.(((.((((((((((..(((.....)))))))).((((.....)))).))))).))).((((.....)))).)))))))))))-.... ( -26.50)
>DroEre_CAF1 30590 77 + 1
AAAAGCUUUUGAGCGAAUGGCCCAGGAAAUUGUAUAAAGCAUUCCUGUCUGACAGGAAUAAACU-----------------------UGAGAGUUU-AUUA
..(((((((..((..(((..(....)..))).........(((((((.....)))))))...))-----------------------..)))))))-.... ( -18.70)
>DroYak_CAF1 22346 99 + 1
AAAAGCUUUUGAGCGAAUGGCCCAGGAAAUUGUAUAAAGCAUUCCUGUCUGAAGGACAUAACAUCGCUUUAAGGCGUGCAGCUUCC-AGGGAGUUU-AUUA
....(((....)))((((..(((.((((.((((((.......((((......)))).........(((....))))))))).))))-.))).))))-.... ( -25.60)
>consensus
AAAAGCUUUUGAGCAAAUGGGCUAGGAAAUUGUAUAAAGCAUUCCUGUCUGACAGUCAGAAAGUCCCUUUAAGGCAUUCAGCUUCUUCGAGAGUUU_AUUA
..(((((((((((.....((((.(((((..(((.....)))))))))))).....................((((.....)))).)))))))))))..... (-14.20 = -15.20 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:34:41 2006