Locus 9438

Sequence ID 3R_DroMel_CAF1
Location 25,005,605 – 25,005,712
Length 107
Max. P 0.711458
window15116

overview

Window 6

Location 25,005,605 – 25,005,712
Length 107
Sequences 3
Columns 107
Reading direction forward
Mean pairwise identity 92.83
Mean single sequence MFE -35.13
Consensus MFE -29.29
Energy contribution -30.07
Covariance contribution 0.78
Combinations/Pair 1.03
Mean z-score -2.28
Structure conservation index 0.83
SVM decision value 0.38
SVM RNA-class probability 0.711458
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25005605 107 + 27905053
GAUGGAUUAUAAGCUAUUCGAUUUACUCGGCUGUGCUCCCAAUCGUAUUGCCCAGUAAUAUGCAUUGAAUGGGUCGCACAGCUGGGUCCCAUCUGCAGCGUAUUACU
(((((........(.....)....((((((((((((.((((.(((...(((..(....)..))).))).))))..)))))))))))).))))).............. ( -35.20)
>DroSec_CAF1 28063 107 + 1
GAUGGAUUAUAACUUAUUCGAUUUACUCGGUUGUGCUCCCAAUGGUAUUGCCCAGUAAUAAGCAUUGGAUGGGUCGCACAGCUGGGUGCCAUCUGCAGCGUAUUACU
(((((.......(......)...(((((((((((((.(((((((.((((((...))))))..)))....))))..)))))))))))))))))).............. ( -32.90)
>DroSim_CAF1 22163 107 + 1
GAUGGAUUAUAAGUUAUUCGAUUUACUCGGUUGUGCUCCCAAUGGUAUUGGCCAGUAAAUGGCUUUGGAUGGGUCGCACAGCUGGGUCCCAUCUGCAGCGUAUUACU
(((((....((((((....))))))(((((((((((.((((.(.(....(((((.....))))).).).))))..)))))))))))..))))).............. ( -37.30)
>consensus
GAUGGAUUAUAAGUUAUUCGAUUUACUCGGUUGUGCUCCCAAUGGUAUUGCCCAGUAAUAAGCAUUGGAUGGGUCGCACAGCUGGGUCCCAUCUGCAGCGUAUUACU
(((((....((((((....))))))(((((((((((.((((.(((......)))((.....))......))))..)))))))))))..))))).............. (-29.29 = -30.07 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:34:40 2006