Locus 9437

Sequence ID 3R_DroMel_CAF1
Location 25,003,075 – 25,003,166
Length 91
Max. P 0.754254
window15115

overview

Window 5

Location 25,003,075 – 25,003,166
Length 91
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 83.84
Mean single sequence MFE -22.94
Consensus MFE -21.72
Energy contribution -21.58
Covariance contribution -0.14
Combinations/Pair 1.04
Mean z-score -1.42
Structure conservation index 0.95
SVM decision value 0.48
SVM RNA-class probability 0.754254
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25003075 91 - 27905053
GUAGGAAUGGCAUUGAUGUUUGUUAUUAUUUGUGUCGUCCUGCGAUUGUUUAGCCAGUGAGUAAAUUGCAAUGCAAACAUCUCCAU------CUCCA-------------------
((((((.((((((.((((........)))).))))))))))))(((.((((.((..(..(.....)..)...))))))))).....------.....------------------- ( -22.80)
>DroVir_CAF1 44386 108 - 1
GUAGGAAUGGCAUUGAUGUUUAUUAUUAUUUGUGUCGUCCUGCGAUUGUUUAGCCAGUGAGUAAAUUGCAAUGCAAACAUUU--AU------CACUUAUCACUUAUCACCCUAAGC
((((((.((((((.((((........)))).))))))))))))(((.........(((((.((((((((...)))...))))--))------))))........)))......... ( -23.83)
>DroGri_CAF1 28453 90 - 1
GUAGGAAUGGCAUUGAUGUUUAUUAUUAUUUGUGUCGUCCUGCGAUUGUUUAGCCAGUGAGUAAAUUGCAAUGCAAAUAUUU--AU------CACCAA------------------
((((((.((((((.((((........)))).)))))))))))).............((((.((((((((...)))...))))--))------)))...------------------ ( -21.50)
>DroSec_CAF1 25626 97 - 1
GUAGGAAUGGCAUUGAUGUUUGUUAUUAUUUGUGUCGUCCUGCGAUUGUUUAGCCAGUGAGUAAAUUGCAAUGCAAACAUCUCCAUCUCCAUCUCCA-------------------
((((((.((((((.((((........)))).))))))))))))(((.((((.((..(..(.....)..)...)))))))))................------------------- ( -22.80)
>DroWil_CAF1 29621 89 - 1
GUAGGAAUGGCAUUGAUGUUUAUUAUUAUUUGUGUCGUCCUGCGAUUGUUUAGCCAGUGAGUAAAUUGCAAAGCAAACAUUCCAUU------CAC---------------------
((((((.((((((.((((........)))).))))))))))))((.(((((.((..(..(.....)..)...))))))).))....------...--------------------- ( -23.90)
>DroYak_CAF1 19058 94 - 1
GUAGGAAUGGCAUUGAUGUUUGUUAUUAUUUGUGUCGUCCUGCGAUUGUUUAGCCAGUGAGUAAAUUGCAAUGCAAACAUCUCCAUCCCCCG---CA-------------------
((((((.((((((.((((........)))).))))))))))))(((.((((.((..(..(.....)..)...)))))))))...........---..------------------- ( -22.80)
>consensus
GUAGGAAUGGCAUUGAUGUUUAUUAUUAUUUGUGUCGUCCUGCGAUUGUUUAGCCAGUGAGUAAAUUGCAAUGCAAACAUCUCCAU______CACCA___________________
((((((.((((((.((((........)))).))))))))))))...(((((.((..(..(.....)..)...)))))))..................................... (-21.72 = -21.58 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:34:39 2006