Locus 9434

Sequence ID 3R_DroMel_CAF1
Location 24,998,175 – 24,998,277
Length 102
Max. P 0.775890
window15111

overview

Window 1

Location 24,998,175 – 24,998,277
Length 102
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 77.55
Mean single sequence MFE -38.65
Consensus MFE -28.08
Energy contribution -27.67
Covariance contribution -0.41
Combinations/Pair 1.44
Mean z-score -1.24
Structure conservation index 0.73
SVM decision value 0.54
SVM RNA-class probability 0.775890
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24998175 102 - 27905053
ACACCGCACAUUGCU---GGUCG-GGCCGAG--GAUUUUCGGGCAGUGCAUUGGGCUAGCCGAAAAUAGGGGAAGAUUUGCGGGUCUGUCCAAUGCAAAGGUCGAAU-G
...((((.....))(---((...-..))).)--)...(((((.(..((((((((((.(.(((.((((........)))).))).)..))))))))))..).))))).-. ( -33.10)
>DroPse_CAF1 20610 109 - 1
CCACCACUCACCGAUCGGGAUCGAGGCCGGGGGGGACCUGGGAUUGUGCAUUGGGCUAGCCGGGAAUAGGGGAAGAUUUUCGGGUCUGUCCAAUGCAGAGUUCGAAGCG
.......((.((....))))((((..((.(((....))).))(((.((((((((((.(.(((..(((........)))..))).)..)))))))))).))))))).... ( -42.80)
>DroSec_CAF1 20681 102 - 1
ACACCGCACAUUGCU---GGUCG-GGCCGAG--GAUUUUCGGGCAGUGCAUUGGGCUAGCCGGAAAUAGGGGAAGAUUUGCGGGUCUGUCCAAUGCGAAGGCCGAAU-G
...((((.....))(---((...-..))).)--)...(((((.(..((((((((((.(.(((.((((........)))).))).)..))))))))))..).))))).-. ( -37.40)
>DroYak_CAF1 14006 102 - 1
ACACCGCACAUUGCA---GAUCG-GGCCAAG--GAUUUUCGGGCAGUGCACUGGGCUAGCCGGGAAUAGGGGAAGAUUUCCGGGUCUGUCCAAUGCGGUGGCCGAAU-G
.(((((((((((((.---((...-..(....--)....))..))))))...(((((.(.((((((((........)))))))).)..))))).))))))).......-. ( -38.50)
>DroAna_CAF1 25510 103 - 1
ACA-CACACAUCUCC-AGGAUCG-GAGGUCU--GGCUUUCGAAUUGGGUAUUGGGCUAGUCGAGAAUAGGGGAAGAUUUUCGGGUCUGUCCAAUGCGGAGUUUGAAG-U
...-..((.((((((-......)-))))).)--)..(((((((((..(((((((((.(.((((((((........)))))))).)..)))))))))..)))))))))-. ( -36.00)
>DroPer_CAF1 30320 109 - 1
CCACCACUCACCGAUCGGGAUCGUGGCCGGGGGGGACCUGGGAUUGUGCAUUGGGCUAGCCGGGAAUAGGGGAAGAUUUUCGGGUCUGUCCAAUGCAGAGUUCGAAGCG
...((((((.((....))))..))))((.(((....))).))(((.((((((((((.(.(((..(((........)))..))).)..)))))))))).)))........ ( -44.10)
>consensus
ACACCACACAUCGCU___GAUCG_GGCCGAG__GAUUUUCGGACAGUGCAUUGGGCUAGCCGGGAAUAGGGGAAGAUUUUCGGGUCUGUCCAAUGCAGAGGUCGAAG_G
......................................((((.((.((((((((((.(.((((((((........)))))))).)..)))))))))).)).)))).... (-28.08 = -27.67 +  -0.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:34:35 2006