| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,988,752 – 24,988,868 |
| Length | 116 |
| Max. P | 0.755707 |
| Location | 24,988,752 – 24,988,868 |
|---|---|
| Length | 116 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 80.35 |
| Mean single sequence MFE | -25.74 |
| Consensus MFE | -15.41 |
| Energy contribution | -15.30 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.755707 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24988752 116 - 27905053 CAAAAAUAUGACUAUUUGCCAAUUCUAAUAAAACCUUACUGUUGUACUGAGCCGCAAUUACACAAUUCAUACUUACAUAUAGACUCCAAGCGCUUAACACUGCGACUGGUGUUUAC ......(((((....((((...(((......(((......))).....)))..)))).........)))))........(((((.(((..(((........)))..))).))))). ( -17.12) >DroSim_CAF1 4611 109 - 1 -----AUAUGAACAUUU--UAAUUAUAAUAAAGCGUGACUCUUGUACUGAGCCGCAAUUAUACAAUUCAUACUUACAUAUGGACUCCAAGCGCUUAACACUGCGACUGGUGUUCAC -----.((((((.....--(((((........(((.(.(((.......)))))))))))).....))))))........(((((.(((..(((........)))..))).))))). ( -24.10) >DroEre_CAF1 10856 113 - 1 CGUACAUAUGCAUAUUG---CAUAGUCACGAAACGUGACUAUUGUACGGGACCGCAACUACACAAUUGCUACUUACAUAUGGACUCCAAGCGCUUAACACUGCGACUGGUGUUCAC (((((((((((.....)---))))((((((...))))))...)))))).....((((........))))..........(((((.(((..(((........)))..))).))))). ( -36.00) >consensus C__A_AUAUGAAUAUUU___AAUUAUAAUAAAACGUGACUAUUGUACUGAGCCGCAAUUACACAAUUCAUACUUACAUAUGGACUCCAAGCGCUUAACACUGCGACUGGUGUUCAC .....(((((...............((((.....))))...((((........))))..................)))))((((.(((..(((........)))..))).)))).. (-15.41 = -15.30 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:34:33 2006