Locus 9431

Sequence ID 3R_DroMel_CAF1
Location 24,985,232 – 24,985,331
Length 99
Max. P 0.542910
window15108

overview

Window 8

Location 24,985,232 – 24,985,331
Length 99
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 90.91
Mean single sequence MFE -16.20
Consensus MFE -12.14
Energy contribution -12.14
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.61
Structure conservation index 0.75
SVM decision value 0.02
SVM RNA-class probability 0.542910
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24985232 99 + 27905053
CAAUAUUCAAAUGAUUAACGCGAAUCAAUUAACGCCCAUUUGGUGUUGAUGUUCACAAAUACUACAUGUCUACAUUCAUAAUUUUAUUGUUAGUUAAUU
...........(((((((((.((((..(((((((((.....))))))))))))).).........(((........))).........))))))))... ( -18.20)
>DroSec_CAF1 7760 99 + 1
CAACAUUCAUAUGAUUAACGCGAAUCAAUUAACGCCCAUUUGGUGUUGAUGUUCACAACUACUACAUGUCUACAUUCAUCAUUUUAUUAUUGGUUUAUU
(((.......(((((....(.((((..(((((((((.....))))))))))))).).........(((....)))..))))).......)))....... ( -14.34)
>DroSim_CAF1 1073 99 + 1
CAACAUUCAUAUGAUUAACGCGAAUCAAUUAACGCCCAUUUGGUGUUGAUGUUCACAAAUACUACAUGUCUACAUUCAUCAUUUUAUUAUUGGUUUAUU
(((.......(((((....(.((((..(((((((((.....))))))))))))).).........(((....)))..))))).......)))....... ( -14.34)
>DroEre_CAF1 7293 86 + 1
CAAUAUUCAUAUGAUUAAUGCGAAUCAAUUAACGCCCAUUUGGUGUUGAUGUUCACAAAUACUACAU------------CA-UUUAUUAUUGGUUUAUU
(((((.....(((((...((.((((..(((((((((.....))))))))))))).))........))------------))-)....)))))....... ( -16.30)
>DroYak_CAF1 1069 99 + 1
CAAUAUUCAUAUGAUUAACGCGAAUCAAUUAACGCCCCUUUGGUGUUGAUGUUCACAAAUACUACAUGUCUACAUUCAUCAUUUUAUUAUUGGUUUAUU
(((((.....(((((....(.((((..(((((((((.....))))))))))))).).........(((....)))..))))).....)))))....... ( -17.80)
>consensus
CAAUAUUCAUAUGAUUAACGCGAAUCAAUUAACGCCCAUUUGGUGUUGAUGUUCACAAAUACUACAUGUCUACAUUCAUCAUUUUAUUAUUGGUUUAUU
...................(.((((..(((((((((.....))))))))))))).)........................................... (-12.14 = -12.14 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:34:33 2006