Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,124,515 – 3,124,634 |
Length | 119 |
Max. P | 0.999102 |
Location | 3,124,515 – 3,124,634 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.32 |
Mean single sequence MFE | -38.34 |
Consensus MFE | -34.84 |
Energy contribution | -35.28 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.07 |
Mean z-score | -1.95 |
Structure conservation index | 0.91 |
SVM decision value | 2.63 |
SVM RNA-class probability | 0.995903 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3124515 119 + 27905053 AGCUCCCUUACCAACUUGGCACCGCUUGUCUCGGCCAACUAAUUUCGCUAAUGCAAGUGACAACGGCAGCAAAAAAUGCCGUGAUUGUUGACGCAGCCAGUUGGCAAAGGGCAGAAGGA- ..(((((((.((((((.(((..(((((((.(..((.((.....)).))..).)))))))...((((((........)))))).............)))))))))..))))).)).....- ( -41.10) >DroSec_CAF1 203 120 + 1 AGAUCCCCUACCAACUUGGCACCGCUUGUCUCGGCCAUCUAAUUUCGCUAAUGCAAGUGACAACGGCAGCAAAAAAUGCUGUGAUUGUUGACGCAGCCAGUUGGCAAAGGGCAGAUGGAU ..(((((((.((((((.(((..(((((((.(..((...........))..).))))))).(((((((((((.....))))))...))))).....)))))))))...))))..))).... ( -40.40) >DroSim_CAF1 287 119 + 1 AGCUCCCCUACCAACUUGGCACCGCUUGUCUCGGCCAACUAAUUUCGCUAAUGCAAGUGACAACGGCAGCAAAAAAUGCCGUGAUUGUAGACGCAGCCAGU-GGCAAAGGGCAGAUGGAU ..((.((((.(((...((((..(((((((.(..((.((.....)).))..).)))))))(((((((((........))))))...))).......)))).)-))...)))).))...... ( -35.80) >DroEre_CAF1 305 119 + 1 AGCUUCCUUACCAACUUGGCACCGCUUGUCUCGGCCAACUAAUUUCGCUAAUGCAAGUGACAACGGCAGCAAAAAAUGCCGUGAUUGUUGACGCAGCCAGUUGGCAAAGGGCAGAUGAA- .((..((((.((((((.(((..(((((((.(..((.((.....)).))..).)))))))...((((((........)))))).............)))))))))..)))))).......- ( -38.30) >DroYak_CAF1 431 119 + 1 AGCUUCCUUACCAACUUGGCACCGCUUGUCUCGGCCAACUAAUUUCGCUAAUGCAAGUGACAACAGCAGCAAAAAAUGCCGUGAUUGUUGACGCAGCCAGUUGGCAAAGGGCACAUGAA- .((..((((.((((((.(((..(((((((.(..((.((.....)).))..).))))))).(((((((((((.....)))..)).)))))).....)))))))))..)))))).......- ( -36.10) >consensus AGCUCCCUUACCAACUUGGCACCGCUUGUCUCGGCCAACUAAUUUCGCUAAUGCAAGUGACAACGGCAGCAAAAAAUGCCGUGAUUGUUGACGCAGCCAGUUGGCAAAGGGCAGAUGGA_ ....(((((.((((((.(((..(((((((.(..((...........))..).)))))))...((((((........)))))).............)))))))))..)))))......... (-34.84 = -35.28 + 0.44)
Location | 3,124,515 – 3,124,634 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.32 |
Mean single sequence MFE | -41.74 |
Consensus MFE | -38.86 |
Energy contribution | -39.26 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.06 |
Mean z-score | -2.12 |
Structure conservation index | 0.93 |
SVM decision value | 3.37 |
SVM RNA-class probability | 0.999102 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3124515 119 - 27905053 -UCCUUCUGCCCUUUGCCAACUGGCUGCGUCAACAAUCACGGCAUUUUUUGCUGCCGUUGUCACUUGCAUUAGCGAAAUUAGUUGGCCGAGACAAGCGGUGCCAAGUUGGUAAGGGAGCU -.......(((((((((((((((((.....((((....((((((........))))))......((((....)))).....))))((((.......))))))).)))))))))))).)). ( -45.20) >DroSec_CAF1 203 120 - 1 AUCCAUCUGCCCUUUGCCAACUGGCUGCGUCAACAAUCACAGCAUUUUUUGCUGCCGUUGUCACUUGCAUUAGCGAAAUUAGAUGGCCGAGACAAGCGGUGCCAAGUUGGUAGGGGAUCU ..........(((((((((((((((..((((.(((((..(((((.....)))))..)))))...((((....)))).....))))((((.......))))))).)))))))))))).... ( -44.00) >DroSim_CAF1 287 119 - 1 AUCCAUCUGCCCUUUGCC-ACUGGCUGCGUCUACAAUCACGGCAUUUUUUGCUGCCGUUGUCACUUGCAUUAGCGAAAUUAGUUGGCCGAGACAAGCGGUGCCAAGUUGGUAGGGGAGCU ........((((((((((-((((((((((...(((((..(((((.....)))))..)))))....)))).((((.......))))((((.......))))))).)).))))))))).)). ( -39.20) >DroEre_CAF1 305 119 - 1 -UUCAUCUGCCCUUUGCCAACUGGCUGCGUCAACAAUCACGGCAUUUUUUGCUGCCGUUGUCACUUGCAUUAGCGAAAUUAGUUGGCCGAGACAAGCGGUGCCAAGUUGGUAAGGAAGCU -.......((.((((((((((((((.....((((....((((((........))))))......((((....)))).....))))((((.......))))))).)))))))))))..)). ( -40.10) >DroYak_CAF1 431 119 - 1 -UUCAUGUGCCCUUUGCCAACUGGCUGCGUCAACAAUCACGGCAUUUUUUGCUGCUGUUGUCACUUGCAUUAGCGAAAUUAGUUGGCCGAGACAAGCGGUGCCAAGUUGGUAAGGAAGCU -.......((.((((((((((((((..(((......((.((((...((((((((.(((........))).)))))))).......)))).))...)))..))).)))))))))))..)). ( -40.20) >consensus _UCCAUCUGCCCUUUGCCAACUGGCUGCGUCAACAAUCACGGCAUUUUUUGCUGCCGUUGUCACUUGCAUUAGCGAAAUUAGUUGGCCGAGACAAGCGGUGCCAAGUUGGUAAGGGAGCU ........(((((((((((((((((((((...(((((..(((((.....)))))..)))))....))))................((((.......))))))).)))))))))))).)). (-38.86 = -39.26 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:10 2006