| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,982,189 – 24,982,429 |
| Length | 240 |
| Max. P | 0.761039 |
| Location | 24,982,189 – 24,982,309 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 96.67 |
| Mean single sequence MFE | -45.80 |
| Consensus MFE | -44.44 |
| Energy contribution | -44.33 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.97 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24982189 120 - 27905053 GUGGCCACCUUCUCGCGCUCCUCGCUCUUCUUCUCCUCCAGUGGGGCGGGAUAUGCGUAUAACGAGGGCUUGGCCGCCGACUUGUACUCCAUCUUGGGCAUUUUCAGAUCGGAGUUCAGG ((((((((((((..(((((((.((((((.((........)).)))))))))...)))).....)))))..)))))))...((((.(((((((((.(((....))))))).))))).)))) ( -47.30) >DroSim_CAF1 4430 120 - 1 GUGGCCACCUUCUCGCGCUCCUCGCUCUUCUUCUCCUCCAGUGGGGCGGGAUAUGCGUAUAACGAGGGCUUUGCCGCCGACUUGUACUCCAUCUUGGGCAUUUUCAGAUCGGAGUUCAGG (((((..(((((..(((((((.((((((.((........)).)))))))))...)))).....)))))....)))))...((((.(((((((((.(((....))))))).))))).)))) ( -42.20) >DroYak_CAF1 9375 120 - 1 GUGGCCACCUUCUCGCGCUCCUCGCUCUUCUUCUCCUCCAGUGGGGCGGGAUAGGCGUACAACGAGGGCUUGGCUGCCGACUUGUACUCCAUCUUGGGCAUCUUCAGGUCGGAGUUCAGG (..(((((((((..(((((.((((((((.((........)).))))))))...))))).....)))))..))))..)...((((.(((((..((((((....))))))..))))).)))) ( -47.90) >consensus GUGGCCACCUUCUCGCGCUCCUCGCUCUUCUUCUCCUCCAGUGGGGCGGGAUAUGCGUAUAACGAGGGCUUGGCCGCCGACUUGUACUCCAUCUUGGGCAUUUUCAGAUCGGAGUUCAGG ((((((((((((..(((((((.((((((.((........)).)))))))))...)))).....)))))..)))))))...((((.(((((((((.(((....))))))).))))).)))) (-44.44 = -44.33 + -0.11)
| Location | 24,982,309 – 24,982,429 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 95.56 |
| Mean single sequence MFE | -32.65 |
| Consensus MFE | -31.92 |
| Energy contribution | -31.82 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.98 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.761039 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24982309 120 - 27905053 UCUUCGUCCUUCUUGACAGCAGCACCCUCCUUGCUGUCCUCGUCCACAUCCAUCUUCUCAUCCUCUUUUUUGUCGGCAUUCUCGCGUCUCUUCUGGCGGGCGGCAAUGGACAGAACUGCG .....(((......))).((((..(..((((((((((((..(((.(((......................))).)))........(((......)))))))))))).)))..)..)))). ( -32.35) >DroSim_CAF1 4550 120 - 1 UCCUCGUCCUUCUUGACGGCGGCACCCUCCUUGCUGUCCUCGUCCACAUCCAUCUUCUCAUCCUCCUUUUUGUCGGCAUUCUCGCGUCUCUUCUGGCGGGCGGCAAUGGACAGAACUGCG ....((((......))))((((..(..((((((((((((..(((.(((......................))).)))........(((......)))))))))))).)))..)..)))). ( -33.25) >DroYak_CAF1 9495 120 - 1 UCCUCGUCCUUCUUGACGGCAGCGCCCUCUUUGCUGUCCUCGUCCACAUCCAUCUUCUCAUCCUCUUUUUUGUCGGCAUUCUCGCGUCUCUUUUGGCGGGCGGCAAUGGAAAGAACUGCG ....((((......))))((((..(..((((((((((((..(((.(((......................))).)))........(((......)))))))))))).)))..)..)))). ( -32.35) >consensus UCCUCGUCCUUCUUGACGGCAGCACCCUCCUUGCUGUCCUCGUCCACAUCCAUCUUCUCAUCCUCUUUUUUGUCGGCAUUCUCGCGUCUCUUCUGGCGGGCGGCAAUGGACAGAACUGCG ....((((......))))((((..(..((((((((((((..(((.(((......................))).)))........(((......)))))))))))).)))..)..)))). (-31.92 = -31.82 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:34:31 2006