Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 24,974,872 – 24,974,992 |
Length | 120 |
Max. P | 0.743832 |
Location | 24,974,872 – 24,974,992 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.72 |
Mean single sequence MFE | -48.63 |
Consensus MFE | -39.74 |
Energy contribution | -38.69 |
Covariance contribution | -1.05 |
Combinations/Pair | 1.34 |
Mean z-score | -2.06 |
Structure conservation index | 0.82 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.743832 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24974872 120 + 27905053 CCAGAAGACUUGGCGCCUGAACGAGCGCCACUACGGUGGACUCACUGGCCUGAACAAGGCCGAGACCGCCGCCAAGUACGGCGAGGCCCAGGUGCAGAUCUGGCGUCGCAGCUUCGACAC ...((((((((((((.(.....(((..((((....)))).))).(((((((.....))))).))...).))))))))...((((.(((.((((....))))))).))))..))))..... ( -54.60) >DroVir_CAF1 1587 120 + 1 UUAUAAGACCUGGCGCCUGAAUGAGCGUCACUAUGGCGGUUUGACUGGCCUGAAUAAGGCCGAGACCGCUGCCAAGUACGGCGAGGCUCAGGUGCAAAUCUGGCGACGCAGCUUCGACAC .....(((....((((((((....((.((.....((((((((...((((((.....))))))))))))))(((......))))).))))))))))...)))(((......)))....... ( -47.40) >DroGri_CAF1 299 120 + 1 CCAGAAGACGUGGCGUCUCAAUGAACGUCACUAUGGCGGUUUGACGGGGCUGAAUAAGGCGGAGACCGCCGCCAAGUAUGGUGAAGCCCAGGUGCAGAUCUGGAGACGUAGCUUCGAUAC ...((((.(...(((((((.......(((.....)))((((((((.(((((......(((((...)))))((((....))))..)))))..)).))))))..))))))).)))))..... ( -47.10) >DroWil_CAF1 1516 120 + 1 CCAAAAGACUUGGCGUCUCAAUGAACGUCACUAUGGUGGUCUAACCGGUCUGAACAAGGCCGAGACGGCUGCCAAAUACGGUGAGGCCCAGGUGCAAAUCUGGCGUCGCAGCUUCGACAC .......((((((.((((((.....(((.....(((..(((....((((((.....))))))....)))..)))...))).))))))))))))((.......))((((......)))).. ( -42.20) >DroMoj_CAF1 1583 120 + 1 CUACAAGACCUGGCGCCUGAAUGAGCGUCACUAUGGUGGUUUGACCGGCCUGAACAAGGCUGAGACCGCCGCCAAAUAUGGCGAGGCUCAGGUGCAAAUCUGGCGUCGCAGCUUCGACAC ....(((...(((((((.....((((.((.....((((((((...((((((.....))))))))))))))((((....)))))).))))((((....)))))))))))...)))...... ( -50.30) >DroAna_CAF1 1899 120 + 1 CCAGAAGACCUGGCGUCUGAACGAGCGCCACUACGGUGGACUCACUGGCCUGAACAAGGCCGAGACGGCCGCCAAGUACGGUGAGGCCCAAGUACAGAUCUGGCGCCGCAGCUUCGACAC ...((((...(((((((.((.((((..((((....)))).)))((((((((......(((((...)))))(((......))).)))))..)))...).)).)))))))...))))..... ( -50.20) >consensus CCAGAAGACCUGGCGCCUGAAUGAGCGUCACUAUGGUGGUCUGACUGGCCUGAACAAGGCCGAGACCGCCGCCAAGUACGGCGAGGCCCAGGUGCAAAUCUGGCGUCGCAGCUUCGACAC ..........(((((((.....).))))))....((((((((...((((((.....))))))))))))))(((......)))(((((((((((....)))))).......)))))..... (-39.74 = -38.69 + -1.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:34:25 2006