| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,970,880 – 24,970,980 |
| Length | 100 |
| Max. P | 0.645870 |
| Location | 24,970,880 – 24,970,980 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 72.18 |
| Mean single sequence MFE | -25.92 |
| Consensus MFE | -12.37 |
| Energy contribution | -13.28 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.645870 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24970880 100 + 27905053 CCAGAACAUAGCCUUUGAUUUUCUGCGCAACAACUGGCAGGAGAUCAAGACCUAGUAAGUGGCGAAAUUGUCGCUU-------UAUUCCGU-GCAUUACUAAAGGGUU .........(((((((((((((((((.((.....))))))))))))......(((((((((((((.....))))).-------........-)).))))))))))))) ( -27.80) >DroPse_CAF1 13300 103 + 1 CCAGCAGAUAGCCUUUGAUUUCCUACGCAAUAACUGGCAUGAGAUCAACACCUAGUAAGGAACCA-----UCACCAGCGUGAUGAUUUGACGAUUUUAAUAGGGGACU ...((.....))......(..((((.((........)).(((((((....(((....)))...((-----((((....)))))).......))))))).))))..).. ( -21.90) >DroSec_CAF1 12983 100 + 1 UCAGAACAUAGCCUUUGAUUUCCUGCGCAACAACUGGCAGGAGAUCAAGACCUAGUAAGUGGCGAAAUAGUCGCUA-------UAUUUCAC-ACAGUACUAAAGGGAU ...........(((((((((((((((.((.....))))))))))))......(((((.(((..((((((.......-------)))))).)-))..)))))))))).. ( -31.40) >DroEre_CAF1 13280 100 + 1 ACAAAACAUAGCCUUUGAUUUUCUGCGAAACAACUGGCAGGAGAUCAAGACCUAGUAAGUGGCAGAAAAGUAGUUA-------CAUUGUAU-GCAGUGCUAACGACAU .((.....(((..(((((((((((((.(......).)))))))))))))..))).....))........((.((((-------(((((...-.))))).)))).)).. ( -28.00) >DroYak_CAF1 13053 100 + 1 CCAAAACAUUGCCUUUGAUUUUCUGCGAAACAACUGGCAGGAGAUCAAGACCUAGUAAGUGGCGGAAAAGUAGCUA-------CAUUCCCA-UCUGUAAUAAAUACAU .......(((((.(((((((((((((.(......).))))))))))))).........(((((.........))))-------).......-...)))))........ ( -24.50) >DroPer_CAF1 13381 103 + 1 CCAGCAGAUAGCCUUUGAUUUCCUACGCAAUAACUGGCAUGAGAUCAAUACCUAGUAAGGAACCA-----UCACCAGCGUGAUGAUUUGACGAUUUUAAUAGGGGACU ...((.....))......(..((((.((........)).(((((((....(((....)))...((-----((((....)))))).......))))))).))))..).. ( -21.90) >consensus CCAGAACAUAGCCUUUGAUUUCCUGCGCAACAACUGGCAGGAGAUCAAGACCUAGUAAGUGGCGAAA_AGUCGCUA_______CAUUUCAC_ACAGUAAUAAAGGAAU ........(((..(((((((((((((..........)))))))))))))..)))...................................................... (-12.37 = -13.28 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:34:21 2006