Locus 9423

Sequence ID 3R_DroMel_CAF1
Location 24,963,822 – 24,963,942
Length 120
Max. P 0.799326
window15094

overview

Window 4

Location 24,963,822 – 24,963,942
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 72.39
Mean single sequence MFE -38.88
Consensus MFE -15.19
Energy contribution -15.33
Covariance contribution 0.14
Combinations/Pair 1.40
Mean z-score -2.04
Structure conservation index 0.39
SVM decision value 0.61
SVM RNA-class probability 0.799326
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24963822 120 - 27905053
CUCAUUGUGAUAAAUGACACGCUCAUGGACAAUCAUCAACUGGAGUUGGCCAAGCAACUGGCCGCUGAAAACUAUCUGUAUUACUGCAAAGUUACCGACGUGGAUGCCCAGCUAGCUACU
.(((((......)))))...(((..(((.((.((((....((((((.(((((......))))))))...((((...((((....)))).)))).)))..)))).)).)))...))).... ( -26.60)
>DroPse_CAF1 6324 120 - 1
CUCAUUGUGGUCAACGACGAGCUGAUGGACAACCAUCAGCAGGAAUUGGCCACGCAGCUGGCCUCCGAGCAGUACCUCUACUAUUGCAAACCCAGCCAGUUGGCCGUCCAACUGGCUACU
......((((((((...(..((((((((....)))))))).)...))))))))((((((.(....).)))((((....))))..)))......((((((((((....))))))))))... ( -50.20)
>DroGri_CAF1 6178 120 - 1
CUGAUUGUCGUCAACGACGAACUGAUGGACAAUCAUCAGCUGGAAUUGGCACGUCAAUUGGCAUCCGAGCGAUAUUUGUACUACUGCCGGGUUAACGAGGUGAGCGGCAAAAUUGCCACU
.((((((((((((.........)))).))))))))...(((.(..(((....(((....)))(((((.(((.((.......)).))))))))...)))..).)))((((....))))... ( -32.90)
>DroMoj_CAF1 5928 120 - 1
UUAAUCGUGGUCAAUGACGAGCUGAUGGACAACCAUCAGUUGGAAUUGGCCCGUCAAUUGGCUUCCGAGCAGUAUUUAUACUACUGCAAGGUGAACGAGGUUAGCACAAAGCUUGCUUCA
....(((.((((((((((((((((((((....)))))))))((......)))))).)))))))..)))((((((.......)))))).........(((((.(((.....))).))))). ( -44.20)
>DroAna_CAF1 5787 120 - 1
CUUAUUGUAAUCAACGACCAGUUAAUGGACAAUCACCAGUGGGAGCUGGCCCGCCAACUGGCCUCAGAAAACUAUCUCUAUUACAGCAAAGUCGCCGAUUUGGAUGAGAAUCUGGCCACG
....(((((((....(.((((((..(((.......)))(((((......))))).)))))).)..(((........))))))))))....((.((((((((......))))).))).)). ( -29.20)
>DroPer_CAF1 6384 120 - 1
CUCAUUGUGGUCAACGACGAGCUGAUGGACAACCAUCAGCAGGAAUUGGCCACGCAGCUGGCCUCCGAGCAGUACCUCUACUAUUGCAAACCCAGCCAGUUGGCCGUCCAACUGGCUACU
......((((((((...(..((((((((....)))))))).)...))))))))((((((.(....).)))((((....))))..)))......((((((((((....))))))))))... ( -50.20)
>consensus
CUCAUUGUGGUCAACGACGAGCUGAUGGACAACCAUCAGCUGGAAUUGGCCAGGCAACUGGCCUCCGAGCAGUAUCUCUACUACUGCAAAGUCAACGAGGUGGACGCCAAACUGGCUACU
......(((((.........((((((((....)))))))).(((...((((........))))))).............))))).................................... (-15.19 = -15.33 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:34:20 2006