| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,951,349 – 24,951,465 |
| Length | 116 |
| Max. P | 0.633892 |
| Location | 24,951,349 – 24,951,465 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 75.70 |
| Mean single sequence MFE | -34.37 |
| Consensus MFE | -18.91 |
| Energy contribution | -18.17 |
| Covariance contribution | -0.74 |
| Combinations/Pair | 1.65 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.633892 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24951349 116 - 27905053 -UCUCACCUGUGGAGUGUCACAUCCAGUGAUGGGUACAAGUGGAUCGAUGCACUGAUUCAAGUCGAAAAAGAAUAGGUUUUUCUUGUUCAGCACUCCGGAGUCCAUGCCACACUUUC -......((.((((((((...(((((....))))).....(((((((......)))))))..........(((((((.....))))))).)))))))).))................ ( -31.70) >DroVir_CAF1 13925 116 - 1 -ACUUACUUGCGGCGUUUUACAGCCAGUUAUGGGCACCAGCGGAUCAAUACAUUGGUCCAGAUUGAAGAAGAACAAAUACUCUUUAUCGAGCACGCUCGAAUCAAUGCCGCACUUUU -.......((((((........(((.......)))......(((((((....)))))))..(((((.(((((........))))).(((((....))))).)))))))))))..... ( -35.80) >DroPse_CAF1 13445 116 - 1 -ACUUACUUGUGGUGUGGGGCAGCCAGUAAUCGGCACGAGCGGGUCAAUGCACUGCUCCAGAUUGAAGAAGAACAAAUUCUUCUUGUGCAGAACAGGCGAAUCGAUGCCGCACUUCU -.......((((((((.((...(((.((..((.((((((((((((....)).)))))).......((((((((....)))))))))))).)))).)))...)).))))))))..... ( -41.60) >DroGri_CAF1 14996 116 - 1 -AGUUACCUGCGGCGUUUUGCAGCCCGUAAUUGGCACCAGCGGAUCAAUGCAUUCUUCCAGAUUGAAGAAGAACAAAUACUUCUUGUUUAGCACAUUGGAAUCGAUGCCGCAUUUCU -.......(((((((((.((((..((((...((....)))))).....))))...((((((.(((((.(((((.......))))).)))))....))))))..)))))))))..... ( -31.80) >DroYak_CAF1 12266 116 - 1 -ACUCACCUGUGGAGUUUUGCAUCCAGUGAGGGGUACAAAUGGAUCAAUGCACUGGUUCAAGUCGAAAAAGAAUAGGUUCUCCUUAUUCAGCACCCCGGAGUCCAUGCCGCACUUCC -..((((...((((........))))))))(((((.(...(((((((......)))))))..........(((((((.....))))))).).)))))(((((.(.....).))))). ( -31.20) >DroMoj_CAF1 14115 117 - 1 AAUUUACCUGUGGCGUAUUACAGCCCGUAAUGGGCACCAACGGAUCAAUGCAUUGGUCCAGAUUAAAGAAGAACAAGUACUUUUUAUUCAGCACGCUGGAGUCGAUGCCGCACUUCU ........((((((((...((.((((.....)))).(((.((((((((....))))))).((...((((((........))))))..)).....).))).))..))))))))..... ( -34.10) >consensus _ACUUACCUGUGGCGUUUUACAGCCAGUAAUGGGCACCAGCGGAUCAAUGCACUGGUCCAGAUUGAAGAAGAACAAAUACUUCUUAUUCAGCACACUGGAAUCGAUGCCGCACUUCU ........((((((........))).......((((.....((((((......))))))...........(((((((.....)))))))................)))))))..... (-18.91 = -18.17 + -0.74)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:34:18 2006