Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 24,950,871 – 24,950,972 |
Length | 101 |
Max. P | 0.826689 |
Location | 24,950,871 – 24,950,972 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 80.97 |
Mean single sequence MFE | -16.92 |
Consensus MFE | -10.98 |
Energy contribution | -11.38 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -2.00 |
Structure conservation index | 0.65 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.826689 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24950871 101 + 27905053 -AUUUACUCAUCGUACUUUCCCCAACCAAACUAACAAAUAAACUAGAACAAAAAGAGCCGCUGGUGGUUGGCUUCACCGCCAACACGACCACCCACUACAGA -.........((((...........................(((((..............))))).((((((......)))))))))).............. ( -15.14) >DroSec_CAF1 11827 101 + 1 -AUUUGCCCAUCGUACUUUCCCCAACAAAACUAGCAAAUAAACUAGAACAAAAAGAGCCGCUGGUGGUUGGCUUCACCGCCAACAAGACCACCCACUACAGA -...........(((...............((((........))))................((((((((((......)))).....))))))...)))... ( -17.30) >DroSim_CAF1 11873 101 + 1 -AUUUGCCCAUCGUACUUUCCCCAACCAAACUAACAUAUAAACUAGAACAAAAAGAACCGCUGGUGGUUGGCUUCACCGCCAACACGACCACCCACUACAGA -.........((((...........................(((((..............))))).((((((......)))))))))).............. ( -15.14) >DroEre_CAF1 11885 102 + 1 CGUUUAGCCAGCGUUCUUUUCCCAUCCAAACUAUAAAAUAAACCAGAACAAGAAGAGCCGCUGGUGGUUGGCUUCACCACCAACACAACCACCCACUACAUU ......((((((((((((((..............................))))))).))))))).(((((........))))).................. ( -21.11) >DroYak_CAF1 11819 78 + 1 -AUU------------------CAUCCA-ACU----AGCAAACUAGAACAAAAAGAGCCGCUGGUUGUUGGCUUCACCACCAACACAACCACCCUCUACAGA -...------------------......-.((----((....)))).......((((....((((((((((........)))..)))))))..))))..... ( -15.90) >consensus _AUUUACCCAUCGUACUUUCCCCAACCAAACUAACAAAUAAACUAGAACAAAAAGAGCCGCUGGUGGUUGGCUUCACCGCCAACACGACCACCCACUACAGA .............................................................((((.((((((......))))))...))))........... (-10.98 = -11.38 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:34:17 2006