Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,123,660 – 3,123,814 |
Length | 154 |
Max. P | 0.997074 |
Location | 3,123,660 – 3,123,776 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 92.01 |
Mean single sequence MFE | -30.94 |
Consensus MFE | -25.94 |
Energy contribution | -26.06 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.11 |
Mean z-score | -2.52 |
Structure conservation index | 0.84 |
SVM decision value | 2.79 |
SVM RNA-class probability | 0.997074 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3123660 116 - 27905053 AAAAAUGUCCUUGCUGGAUUGCAAAG-CUGUCUUAACCUUUGCGAAGGGCAUUGUAAAAAUGAGACAGAAGUGCGGAUGGUCAAACAUUUGGACACGAAAAAAAGCAGAAAUUUAGU ............((((((((((....-((((((((...(((((((......)))))))..))))))))..((.((((((......)))))).))..........)))...))))))) ( -29.00) >DroSec_CAF1 11230 116 - 1 AAAAAUGUCCUUGCUGGAUUGCAAAG-CUGUCUUAACCUUUGCGAAGGGCAUUGCAGAAAUGAGACAGAAGUGCGGAUGGUCAAACAUUUGGACACGAAAAAAAGCAGAAAUUUAGU ............((((((((((....-((((((((...(((((((......)))))))..))))))))..((.((((((......)))))).))..........)))...))))))) ( -31.10) >DroSim_CAF1 16536 116 - 1 AAAAAUGUCCUUGCUGGAUUGCAAAG-CUGUCUUAACCUUUGCGAAGGGCAUUGCAGAAAUGAGACAGAAGUGCGGAUGGUCAAACAUUUGGACACGAAAAAAAGCAGAAAUUUAGU ............((((((((((....-((((((((...(((((((......)))))))..))))))))..((.((((((......)))))).))..........)))...))))))) ( -31.10) >DroEre_CAF1 11044 116 - 1 -ACACUAUUUUCAGGGCAUCUAAAGGUCUGUCUUAACCUUUGCAAAGGGCAUUGCAGAAAUGAGACAGAAGUGCGGAUGGUCAAACAUUUGGACACGAAAAAAAGCAGAAAUUUAGU -..((((.((((...((.........(((((((((...(((((((......)))))))..))))))))).((.((((((......)))))).))..........)).))))..)))) ( -32.20) >DroYak_CAF1 14968 116 - 1 AGCAAUAUCCUUGGUGAAUUGCAAAG-CUGUCUUAACCUUUGCGAAGGGCAUUGCAGAAAUGAGACAGAAGUGCGGAUGGUCAAACAUUUGGACACGAAAAAAAGCAGAAAUGUAGU .(((((..(....)...)))))....-((((((((...(((((((......)))))))..))))))))..((.((((((......)))))).))..........(((....)))... ( -31.30) >consensus AAAAAUGUCCUUGCUGGAUUGCAAAG_CUGUCUUAACCUUUGCGAAGGGCAUUGCAGAAAUGAGACAGAAGUGCGGAUGGUCAAACAUUUGGACACGAAAAAAAGCAGAAAUUUAGU ..................((((.....((((((((...(((((((......)))))))..))))))))..((.((((((......)))))).))..........))))......... (-25.94 = -26.06 + 0.12)
Location | 3,123,697 – 3,123,814 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 86.26 |
Mean single sequence MFE | -29.08 |
Consensus MFE | -23.89 |
Energy contribution | -24.83 |
Covariance contribution | 0.94 |
Combinations/Pair | 1.11 |
Mean z-score | -1.83 |
Structure conservation index | 0.82 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.833995 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3123697 117 - 27905053 A--AAAACCUUUGAAAACAUCUCUAAAAGUUCAUAUGCCCAAAAAUGUCCUUGCUGGAUUGCAAAGCUGUCUUAACCUUUGCGAAGGGCAUUGUAAAAAUGAGACAGAAGUGCGGAUGG .--..............((((((((.(((..(((.(......).)))..)))..)))).((((...((((((((...(((((((......)))))))..))))))))...)))))))). ( -28.10) >DroSec_CAF1 11267 119 - 1 AAUAAAACCUUGGAAAACAUCUCUAAAAGCUUAUAUGCCCAAAAAUGUCCUUGCUGGAUUGCAAAGCUGUCUUAACCUUUGCGAAGGGCAUUGCAGAAAUGAGACAGAAGUGCGGAUGG .................(((((......((......))........((((.....)))).(((...((((((((...(((((((......)))))))..))))))))...)))))))). ( -29.90) >DroSim_CAF1 16573 119 - 1 AAUAAAACCUUGGAAAACAUCUGUAAAAGCUUAUAUGCCCAAAAAUGUCCUUGCUGGAUUGCAAAGCUGUCUUAACCUUUGCGAAGGGCAUUGCAGAAAUGAGACAGAAGUGCGGAUGG .................((((((((....(((((((((((.......(((.....)))((((((((.(......).)))))))).)))))).......))))).......)))))))). ( -32.21) >DroYak_CAF1 15005 104 - 1 A-UAAAAG--------------CCAAAAGAUUAUAAGCAAAGCAAUAUCCUUGGUGAAUUGCAAAGCUGUCUUAACCUUUGCGAAGGGCAUUGCAGAAAUGAGACAGAAGUGCGGAUGG .-.....(--------------((((..(((.....((...))...))).)))))...(((((...((((((((...(((((((......)))))))..))))))))...))))).... ( -26.10) >consensus A_UAAAACCUUGGAAAACAUCUCUAAAAGCUUAUAUGCCCAAAAAUGUCCUUGCUGGAUUGCAAAGCUGUCUUAACCUUUGCGAAGGGCAUUGCAGAAAUGAGACAGAAGUGCGGAUGG .................(((((........................((((.....)))).(((...((((((((...(((((((......)))))))..))))))))...)))))))). (-23.89 = -24.83 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:08 2006