| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,943,275 – 24,943,395 |
| Length | 120 |
| Max. P | 0.517101 |
| Location | 24,943,275 – 24,943,395 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.61 |
| Mean single sequence MFE | -41.02 |
| Consensus MFE | -26.70 |
| Energy contribution | -26.37 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.65 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.517101 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24943275 120 + 27905053 UACACGGCGCAGCUGACGCAGUUGCUCAGCUUCUACCUGAACGUGCGGCUGCCACAUAAGAUCGCCUAUGGCGACUUCUGUCGUAAGCUGCUCAACGAGGAACAGUUCCGGCGCAAAAUC ......((((((((((.((....))))))))..........(((((((((((.(((.(((.(((((...)))))))).))).)).))))))...))).(((.....))).))))...... ( -43.10) >DroVir_CAF1 4372 120 + 1 UACACGACACAGCUGACGCAGCUGCUCAGCUUCUAUCUGAAUGUGCGGCUGCCGCACAAGAUUGCCUACGGCGAUUUCUGCCGCAAGCUGCUCAACGAGGAGCAGUUUCUGCGCAAGGUU ..((.((...((((((.((....))))))))....))))..(((((((..((.(((..((((((((...)))))))).))).))(((((((((......))))))))))))))))..... ( -44.90) >DroGri_CAF1 4280 120 + 1 UACACGGCACAGCUGACGCAGUUGCUCAGCUUCUAUUUAAAUGUGCGGCUGCCGCAUAAGUUGGCCUACGGCGAUUUCUGUCGCAAGCUGCUCAACGAGGAGCAGUUCCAGCGCAAGGUG ..(((.((..((((((.((....))))))))..........(((((((...))))))).(((((......(((((....))))).((((((((......)))))))))))))))...))) ( -45.90) >DroWil_CAF1 4166 120 + 1 UAUACAGCCCAAUUGACGCAAAUUCUUAGCUUCUACUUAAACGUACGGUUACCGCAAAAGAUUGCCUACGGUGACUUUUGUCGCAAACUUCUCAAUGAAGAGCAGUUCCUGCGAAAAGUA ..(((((((.....((.((.........)).))(((......))).))))..((((...((((((.....(((((....)))))...((((.....)))).))))))..))))....))) ( -25.40) >DroMoj_CAF1 4170 120 + 1 UACACGGUGCAGCUAACGCAGCUGCUCAGCUUCUAUCUGAACGUGCGGCUGCCACACAAGGUCGCCUACAGCGACUUCUGUCGCAAGAUGCGCAACGAGGAGCAGUUUCUCCGAAAGGUG ......(.((((((.....)))))).).((((((........(((((((.(((......))).)))....(((((....))))).....))))....)))))).......((....)).. ( -43.50) >DroAna_CAF1 4304 120 + 1 UACACCGCGCAGCUGACGCAGCUGCUUAGCUUCUACCUGAACGUCCGCCUGCCGUACAAGAUCGCCUACGGCGACUUCUGCCGCAAGGUGUUGAACGAGGAGCAGUUCCGGCGCAAGAUC .....((((((((((...)))))))...((((((...(.((((.((...(((.(((.(((.(((((...)))))))).))).))).)))))).)...)))))).......)))....... ( -43.30) >consensus UACACGGCGCAGCUGACGCAGCUGCUCAGCUUCUACCUGAACGUGCGGCUGCCGCACAAGAUCGCCUACGGCGACUUCUGUCGCAAGCUGCUCAACGAGGAGCAGUUCCUGCGCAAGGUC .........((((((...))))))....((((((..........((((((((.(((.(((.((((.....))))))).))).)).))))))......))))))................. (-26.70 = -26.37 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:34:15 2006