Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 24,942,034 – 24,942,125 |
Length | 91 |
Max. P | 0.999490 |
Location | 24,942,034 – 24,942,125 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 92.53 |
Mean single sequence MFE | -23.28 |
Consensus MFE | -16.94 |
Energy contribution | -17.58 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.05 |
Mean z-score | -2.12 |
Structure conservation index | 0.73 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.629991 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24942034 91 + 27905053 UUUCCUAUUGAACGCUGUCCAACACUGACGACAUCUAUUUUUUCGAUAUCAGCCUAUCGUUUAGCAAUAGGUGUCCUCAUAUCGAUAGCGA ............(((((((......(((.((((((((((.((.(((((......)))))...)).)))))))))).)))....))))))). ( -27.50) >DroSec_CAF1 3078 91 + 1 UUUCCUAUUGAACGCUGUCCAACACUGACGACAGCUAUUUUUUCGAUACCAGCCUAUCGUUCUGCAAUAGGUGUCCUGAUAUCGAUAGCGA ............(((((((((....))..((((.(((((....(((((......)))))......))))).))))........))))))). ( -21.90) >DroSim_CAF1 3069 91 + 1 UUUUCUAUUGAGCGCUGUCUAACACUGACGACAGCUAUUUUUUCGAUACCAGCCUAUCGUUCUGCAAUAGGUGUCCUGAUAUCGAUAGCGA ...........((((((((..........)))))).......((((((.((((((((.(.....).)))))....))).))))))..)).. ( -23.90) >DroEre_CAF1 3129 91 + 1 UUUGCUAUUGAACGCUGUCCAACACUGACGACAGCUCUUUUUCCGAUACCGGCCUAUCGUUCUGCAAUAGGUGUCCUGAUAUCGAUAACGA .(((.((((((..((((((..........)))))).........((((((.((..........))....))))))......)))))).))) ( -20.90) >DroYak_CAF1 2968 91 + 1 UUUGCUAUUGAACGCUGUCCAACACUGACAACAGCUCUUUUUCCGAUACCGGCCUAUCGUUCUGCAAUAGGUGUCCUGGUAUCGAUAACGA .............(((((.((....))...)))))........((((((((((((((.(.....).)))))....)))))))))....... ( -22.20) >consensus UUUCCUAUUGAACGCUGUCCAACACUGACGACAGCUAUUUUUUCGAUACCAGCCUAUCGUUCUGCAAUAGGUGUCCUGAUAUCGAUAGCGA ....(((((((..((((((..........)))))).........((((((.((..........))....))))))......)))))))... (-16.94 = -17.58 + 0.64)
Location | 24,942,034 – 24,942,125 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 92.53 |
Mean single sequence MFE | -29.96 |
Consensus MFE | -25.06 |
Energy contribution | -25.14 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.17 |
Mean z-score | -3.38 |
Structure conservation index | 0.84 |
SVM decision value | 3.65 |
SVM RNA-class probability | 0.999490 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24942034 91 - 27905053 UCGCUAUCGAUAUGAGGACACCUAUUGCUAAACGAUAGGCUGAUAUCGAAAAAAUAGAUGUCGUCAGUGUUGGACAGCGUUCAAUAGGAAA .((((.(((((((...(((.(((((((.....)))))))..((((((.........))))))))).)))))))..))))............ ( -26.40) >DroSec_CAF1 3078 91 - 1 UCGCUAUCGAUAUCAGGACACCUAUUGCAGAACGAUAGGCUGGUAUCGAAAAAAUAGCUGUCGUCAGUGUUGGACAGCGUUCAAUAGGAAA ((.(((((((((((((....(((((((.....))))))))))))))))).......((((((..........))))))......))))).. ( -30.30) >DroSim_CAF1 3069 91 - 1 UCGCUAUCGAUAUCAGGACACCUAUUGCAGAACGAUAGGCUGGUAUCGAAAAAAUAGCUGUCGUCAGUGUUAGACAGCGCUCAAUAGAAAA ..((..((((((((((....(((((((.....))))))))))))))))).......((((((..........))))))))........... ( -31.30) >DroEre_CAF1 3129 91 - 1 UCGUUAUCGAUAUCAGGACACCUAUUGCAGAACGAUAGGCCGGUAUCGGAAAAAGAGCUGUCGUCAGUGUUGGACAGCGUUCAAUAGCAAA ..((((((((((((.((...(((((((.....))))))))))))))))(((.....((((((..........)))))).))).)))))... ( -28.80) >DroYak_CAF1 2968 91 - 1 UCGUUAUCGAUACCAGGACACCUAUUGCAGAACGAUAGGCCGGUAUCGGAAAAAGAGCUGUUGUCAGUGUUGGACAGCGUUCAAUAGCAAA ..((((((((((((.((...(((((((.....))))))))))))))))).....((((.((((((.......))))))))))..))))... ( -33.00) >consensus UCGCUAUCGAUAUCAGGACACCUAUUGCAGAACGAUAGGCUGGUAUCGAAAAAAUAGCUGUCGUCAGUGUUGGACAGCGUUCAAUAGCAAA ......((((((((((....(((((((.....))))))))))))))))).......((((((..........))))))............. (-25.06 = -25.14 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:34:13 2006