Locus 9410

Sequence ID 3R_DroMel_CAF1
Location 24,927,500 – 24,927,604
Length 104
Max. P 0.528737
window15077

overview

Window 7

Location 24,927,500 – 24,927,604
Length 104
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 82.64
Mean single sequence MFE -40.08
Consensus MFE -29.17
Energy contribution -28.70
Covariance contribution -0.46
Combinations/Pair 1.43
Mean z-score -1.42
Structure conservation index 0.73
SVM decision value -0.01
SVM RNA-class probability 0.528737
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24927500 104 - 27905053
UUCAGGCAGAACAACUGCUGGGUGGUGGGAUCAAUGGGCGGCAGUGCAAUGUACCGCUGCUGGCCAUUGUUGGCCAGUUGUGGAGCAGGC------GCCGGAGAUGGAAU
(((.(((......(((((((.....((....)).....)))))))((..(((.((((.((((((((....)))))))).)))).))).))------))).)))....... ( -42.90)
>DroSec_CAF1 40575 104 - 1
UUCAGGCAGAACAACUGUUGGGUGGUGGGAUCAAUGGGCGGCAGGGCAAUGUACCGCUGCUGGCCAUUGUUGGUCAGUUGUGGAGCAGGC------GCCGGAGAAGGGAU
(((.(((.......((((((.....((....)).....)))))).((..(((.((((.((((((((....)))))))).)))).))).))------))).)))....... ( -36.80)
>DroEre_CAF1 39322 104 - 1
UUCAGGCAGAACAACUGCUGGGUGGUGGGAUCGAUGGGCGGCAGGGCAAUGUACCGCUGCUGGCCAUUGUUGGCCAGUUGUGGAGCCGGC------GCCGGAGAUGGAAU
(((((((((.....))))).((((.(((..((.(..((((((.((........)))))))((((((....)))))).)..).)).))).)------))).....)))).. ( -42.00)
>DroWil_CAF1 4546 104 - 1
UUCAGGCAGAACAAUUGCUGUGUACUCGGAUCAAUGGGCGGCAAAGCAAUAUAUCGCUGCUGUCCAUUGCUGACUAUCGGUGCUGUCUGU------GUAGUCUGUGGCAC
..(((((((.......((((.(((.((((..((((((((((((..((........)))))))))))))))))).))))))).))))))).------...((.....)).. ( -35.00)
>DroYak_CAF1 39799 104 - 1
UUCAGGCAGAACAACUGCUGCGUGGUGGGAUCGAUGGGCGGCAGGGCAAUGUACCGCUGCUGGCCAUUGUUGGCCAGUUGUGGAGCAGGC------GCUGGAGAUGGAAU
(((((((.......(((((((.(..((....))..).))))))).....(((.((((.((((((((....)))))))).)))).))).))------.)))))........ ( -44.30)
>DroAna_CAF1 4467 110 - 1
UUCAGGCAGAACAGCUGCUGGGUGCUGGGAUCGAUGGGCGGCAGCGCAAUGUACCUUUGCUGACCGUUGUUGGCCAGCUGGGGAGCCGGUGCGGGGGCAGGAGUUGGCAC
.....((..(((..(((((..(..((((......((.((....)).)).....(((..((((.(((....))).))))..)))..))))..)...)))))..))).)).. ( -39.50)
>consensus
UUCAGGCAGAACAACUGCUGGGUGGUGGGAUCAAUGGGCGGCAGGGCAAUGUACCGCUGCUGGCCAUUGUUGGCCAGUUGUGGAGCAGGC______GCCGGAGAUGGAAU
(((.(((.......((((((..................)))))).((...((.((((.((((((((....)))))))).)))).))..))......))).)))....... (-29.17 = -28.70 +  -0.46)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:34:05 2006