| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,123,344 – 3,123,451 |
| Length | 107 |
| Max. P | 0.512307 |
| Location | 3,123,344 – 3,123,451 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 91.06 |
| Mean single sequence MFE | -45.33 |
| Consensus MFE | -32.26 |
| Energy contribution | -32.70 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.71 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.512307 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3123344 107 - 27905053 GACCAGACCAAGCCGGACCGAAAACCCCCGGCUAAGGUUGCUACAUUGUGCAAAACACGCUU-GGGGGACUGGGUUCGGGGUCCUG------------GCGAGUCCUGUCGGAUGGUCAG (((((((((...(((((((.(...((((((((.....((((........)))).....)).)-)))))..).)))))))))))(((------------(((.....)))))).))))).. ( -47.60) >DroSec_CAF1 10936 106 - 1 GACCAGACCAAGCCGGACCGAAAACCCCCGUCAAAGGUUGCUACAUUGUGCAAAACACGCUU-GG-GGACUGGGUUCGGGGUCCUG------------GCGAGUCCUGUCGGAUGGUCAG (((((((((...(((((((.(....(((((.......((((........))))........)-))-))..).)))))))))))(((------------(((.....)))))).))))).. ( -40.96) >DroSim_CAF1 16243 106 - 1 GACCAGACCAAGCCGGACCGAAAACCCCCGGCAAAGGUUGCUACAUUGUGCAAAACACGCUU-GG-GGACUGGGUUCGGGGUCCUG------------GCGAGUCCUGUCGGAUGGUCAG (((((((((...(((((((.(...((((.(((.....((((........)))).....))).-))-))..).)))))))))))(((------------(((.....)))))).))))).. ( -45.60) >DroEre_CAF1 10730 116 - 1 GACCAGACCAAGCCGGACC-AAAACCCCCGGCAAAGGUUGCUACAUUGUGCAAAACACGCUGUGG-AGACUGGGCUCGGGGUCCUGGCGAGUCCUG--GCGAGUCCUGUCGGAUGGUCAG .....((((..((((((((-(..(((((.(((...(((..(((((.((((.....)))).)))))-..)))..))).)))))..)))....))).)--))..((((....)))))))).. ( -49.50) >DroYak_CAF1 14639 111 - 1 GACCAGACCAAGCCGGACC-AAAACCCCUGGCAAAGGUUGCUACAUUGUGCAAAACACGCUUUGG-GGACUGGGUUCGGGGUCCU-------UCUGGUGCGAGUCCUGUCGGAUGGUCAG (((((((((...(((((((-....((((.(((.....((((........)))).....)))..))-))....)))))))))))..-------((((..(.......)..))))))))).. ( -43.00) >consensus GACCAGACCAAGCCGGACCGAAAACCCCCGGCAAAGGUUGCUACAUUGUGCAAAACACGCUU_GG_GGACUGGGUUCGGGGUCCUG____________GCGAGUCCUGUCGGAUGGUCAG ((((.((((...(((((((.(...((.(((((.....((((........)))).....)))..)).))..).)))))))))))...................((((....)))))))).. (-32.26 = -32.70 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:06 2006