Locus 9407

Sequence ID 3R_DroMel_CAF1
Location 24,923,522 – 24,923,616
Length 94
Max. P 0.524307
window15071

overview

Window 1

Location 24,923,522 – 24,923,616
Length 94
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 78.25
Mean single sequence MFE -21.82
Consensus MFE -13.86
Energy contribution -13.75
Covariance contribution -0.11
Combinations/Pair 1.38
Mean z-score -1.28
Structure conservation index 0.64
SVM decision value -0.02
SVM RNA-class probability 0.524307
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24923522 94 - 27905053
CGUAAUACUAUCUAUAUGUACAAGAUCUACAUACCUUAUUGAGCUGGAUAUUAUUCGAUCCCACCAGAGUGGCAUUCAGCUCGUUGCCGAUGGC
.......(((((..((((((.......)))))).......(((((((((.((((((..........)))))).)))))))))......))))). ( -24.60)
>DroGri_CAF1 448 90 - 1
AUUCAUAAC----GUAUAUGUAUGAUGUACAUACCUUGUUCAGUUGAAUAUUAUUGGAGCCGACGAGCGUGGCGUUCAGCUCAGUGCCGAUUGC
(((((.(((----(..(((((((...)))))))...))))....)))))...(((((.((.((((((((...))))).).)).)).)))))... ( -16.90)
>DroSec_CAF1 36602 90 - 1
CCUAAUACU----AUAUGUAAAAGAUCUACAUACCUUAUUGAGCUGGAUAUUAUUCGAUCCCACCAGAGUGGCAUUCAGCUCGUUCCCGAUGGC
((.......----.((((((.......)))))).......(((((((((.((((((..........)))))).))))))))).........)). ( -20.80)
>DroEre_CAF1 35361 90 - 1
CUUAAUGCG----AUCUGUGGAAGAUCUACAUACCUUAUUGAGCUGGAUAUUAUUCGAUCCCACCAGAGUGGCAUUCAGCUCGUUCCCGAUGGC
......((.----((((((((.....))))).........(((((((((.((((((..........)))))).)))))))))......))).)) ( -26.50)
>DroWil_CAF1 443 89 - 1
CCAAACAC-----AUUUGAGUUGAAUGAGUUUACCUUGUUUAGUUGUAUAUUAUUUGAACCCACAAGAGUGGCAUUUAGCUCACUGCCAAUUGC
........-----...(((((((((((..........((((((.((.....)).))))))((((....)))))))))))))))........... ( -18.80)
>DroYak_CAF1 35794 90 - 1
CUUAAUGCG----AUCUGUACAUGAUCCACAUACCUUAUUGAGCUGGAUAUUAUUCGAUCCCACCAGAGUGGCAUUCAGCUCGUUCCCGAUGGC
.....((.(----(((.......))))))(((.......((((((((((.((((((..........)))))).))))))))))......))).. ( -23.32)
>consensus
CUUAAUACG____AUAUGUACAAGAUCUACAUACCUUAUUGAGCUGGAUAUUAUUCGAUCCCACCAGAGUGGCAUUCAGCUCGUUCCCGAUGGC
.......................................((((((((((.((((((..........)))))).))))))))))........... (-13.86 = -13.75 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:34:00 2006