Locus 9406

Sequence ID 3R_DroMel_CAF1
Location 24,922,880 – 24,922,991
Length 111
Max. P 0.873773
window15070

overview

Window 0

Location 24,922,880 – 24,922,991
Length 111
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 95.87
Mean single sequence MFE -28.28
Consensus MFE -26.74
Energy contribution -26.94
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.30
Structure conservation index 0.95
SVM decision value 0.88
SVM RNA-class probability 0.873773
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24922880 111 - 27905053
ACUGGGCGUCAGAAACGGACCCGGAGGAGACAAUAUUCCUGGAA-AC-----GAAACAAAGCGAAAGCGCCAGGGCGAAAUUAAUAUUUGCUUACAAAAUCAGGCGCAAAGUUGACC
(((..(((((.....((....))(((....)......(((((..-..-----........((....)).)))))(((((.......)))))........)).)))))..)))..... ( -28.12)
>DroSec_CAF1 35992 116 - 1
ACUGGGCGUCAGAAACGGACCCGGAGGAGACAAUAUUCCUGGAA-ACGAAACGAAACAAAGCGAAAGCGCCAGGGCGAAAUUAAUAUUUGCUUACAAAAUCAGGCACAAAGUUGACC
.((((((((.....)))..))))).(....).....((((((..-.((...)).......((....)).)))))).....(((((.(((((((........))))).)).))))).. ( -26.30)
>DroSim_CAF1 31739 116 - 1
ACUGGGCGUCAGAAACGGACCCGGAGGAGACAAUAUUCCUGGAA-ACGAAACGAAACAAAGCGAAAGCGCCAGGGCGAAAUUAAUAUUUGCUUACAAAAUCAGGCGCAAAGUUGACC
(((..(((((.....((....))(((....)......(((((..-.((...)).......((....)).)))))(((((.......)))))........)).)))))..)))..... ( -28.60)
>DroEre_CAF1 34740 111 - 1
ACUGGGCGUCAGAAACGGACCCGGAGGAGACAAUAUUCCUGGA------AACGGAACAAAGCGAAAGCGCCAGGGCGAAAUUAAUAUUUGCUUACAAAAUCAGGCGCAAAGUUGACC
(((..(((((.((......((.((.(....)....((((.(..------..)))))....((....)).)).))(((((.......)))))........)).)))))..)))..... ( -29.80)
>DroYak_CAF1 35160 117 - 1
ACUGGGCGUCAGAAACGGACCCGGAGGAGACAAUAUUCCUGGAAAACGAAACGAAACAAAGCGAAAGCGCCAGGGCGAAAUUAAUAUUUGCUUACAAAAUCAGGCGCAAAGUUGACC
(((..(((((.....((....))(((....)......(((((....((...)).......((....)).)))))(((((.......)))))........)).)))))..)))..... ( -28.60)
>consensus
ACUGGGCGUCAGAAACGGACCCGGAGGAGACAAUAUUCCUGGAA_ACGAAACGAAACAAAGCGAAAGCGCCAGGGCGAAAUUAAUAUUUGCUUACAAAAUCAGGCGCAAAGUUGACC
(((..(((((.((...((..((((.(((.......)))))))..................((....)).)).(((((((.......)))))))......)).)))))..)))..... (-26.74 = -26.94 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:33:59 2006