Locus 9404

Sequence ID	3R_DroMel_CAF1
Location	24,920,398 – 24,920,491
Length	93
Max. P	0.549359

overview

Window 1

Location	24,920,398 – 24,920,491
Length	93
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	98.71
Mean single sequence MFE	-28.12
Consensus MFE	-26.12
Energy contribution	-26.52
Covariance contribution	0.40
Combinations/Pair	1.00
Mean z-score	-1.27
Structure conservation index	0.93
SVM decision value	0.03
SVM RNA-class probability	0.549359
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24920398 93 + 27905053
CUAACAUUUCGACCAUUUUCGCCAUGUCAGGCGGCAGCCAAAAGUGCGCUCAUCUGUGGUUCGCCAGGCAAAAAGUUUGGCGUAUCUAUGAGU
...................((((......))))(((........)))((((((....(((.((((((((.....)))))))).))).)))))) ( -27.60)
>DroSec_CAF1 33546 93 + 1
CUAACAUUUCGACCAUUUUCGCCAUGUCAGGCGGCAGCCAAAAGUGCGCUCAUCUGUGGUUCGCCAGGCAAAAAGUUUGGCGUAUCUAUGAGU
...................((((......))))(((........)))((((((....(((.((((((((.....)))))))).))).)))))) ( -27.60)
>DroSim_CAF1 29265 93 + 1
CUACCAUUUCGACCAUUUUCGCCAUGUCAGGCGGCAGCCAAAAGUGCGCUCAUCUGUGGUUCGCCAGGCAAAAAGUUUGGCGUAUCUAUGAGU
...................((((......))))(((........)))((((((....(((.((((((((.....)))))))).))).)))))) ( -27.60)
>DroEre_CAF1 32260 93 + 1
CUACCAUUUCGACCAUUUUCGCCAUGUCAGGCGGCAGCCAAAAGUGCGCUCAUCUGUGGUUCGCCUGGCAAAAAGUUUGGCGUAUCUAUGAGU
...........(((((...(((((((((((((((..((((...(((....)))...)))))))))))))).......))))).....))).)) ( -28.91)
>DroYak_CAF1 32598 93 + 1
CUACCAUUUCGACCAUUUUCGCCAUGUCAGGCGGCAGCCAAAAGUGCGCUCAUCUGUGGUUCGCCUGGCAAAAAGUUUGGCGUAUCUAUGAGU
...........(((((...(((((((((((((((..((((...(((....)))...)))))))))))))).......))))).....))).)) ( -28.91)
>consensus
CUACCAUUUCGACCAUUUUCGCCAUGUCAGGCGGCAGCCAAAAGUGCGCUCAUCUGUGGUUCGCCAGGCAAAAAGUUUGGCGUAUCUAUGAGU
...................((((......))))(((........)))((((((....(((.((((((((.....)))))))).))).)))))) (-26.12 = -26.52 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:33:51 2006