Locus 9403

Sequence ID 3R_DroMel_CAF1
Location 24,919,483 – 24,919,578
Length 95
Max. P 0.679876
window15060

overview

Window 0

Location 24,919,483 – 24,919,578
Length 95
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 94.46
Mean single sequence MFE -27.88
Consensus MFE -22.66
Energy contribution -22.74
Covariance contribution 0.08
Combinations/Pair 1.17
Mean z-score -1.54
Structure conservation index 0.81
SVM decision value 0.30
SVM RNA-class probability 0.679876
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24919483 95 + 27905053
UGGCUCUUUGCUUUGCUACUAGCAAAGGCAGCUUAACAACCCGAAUUACCUCCAAGGCGCACUAGAAAAUAUAUUUUCCUUGUGGGAAGUGGUGG-
..((.(((((((........)))))))))...................((.(((...(.(((..(((((....)))))...))).)...))).))- ( -24.50)
>DroSec_CAF1 32643 95 + 1
UGGCUCUUUGCUUUGCUACUAGCAAAGGCAGCUUAACAACCCGAAUUACCUCCAAGGCGCACUAGAAAAUAUAUUUUCCUUGCGGCAAGUGGAGG-
..((.(((((((........)))))))))...................((((((.(.((((...(((((....)))))..)))).)...))))))- ( -29.50)
>DroSim_CAF1 28378 95 + 1
UGGCUCUUUGCUUUGCUACUAGCAAAGGCAGCUUAACAACCCGAAUUACCUCCAAGGCGCACUAGAAAAUAUAUUUUCCUUGCGGCAAGUGGAGG-
..((.(((((((........)))))))))...................((((((.(.((((...(((((....)))))..)))).)...))))))- ( -29.50)
>DroEre_CAF1 31306 96 + 1
UGGCUCUCUGCUUUGCUGCUGGCAAAGGCAGCUUAACAACCCGAAUUACCUCCAAGGCGCACUAGAAAAUAUAUUUUCCUUGCGGGAAGUGGGGGC
..((((.(..(((.((((((......)))))).......(((......((.....)).(((...(((((....)))))..)))))))))..))))) ( -29.20)
>DroYak_CAF1 31660 96 + 1
UGGCUCUUUGCUUUGCUGCUGGCAAAGGCAGCUUAACAACCCGAAUUACCUCCAAGGCGCACUAGAAAAUAUAUUUUUCUUGCGGGAAGUGUGAGG
..((.(((((((........)))))))))..((((((..(((......((.....)).(((..((((((.....))))))))))))..)).)))). ( -26.70)
>consensus
UGGCUCUUUGCUUUGCUACUAGCAAAGGCAGCUUAACAACCCGAAUUACCUCCAAGGCGCACUAGAAAAUAUAUUUUCCUUGCGGGAAGUGGAGG_
..((.(((((((........)))))))))...................((((((...((((...(((((....)))))..)))).....)))))). (-22.66 = -22.74 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:33:50 2006