| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,919,322 – 24,919,412 |
| Length | 90 |
| Max. P | 0.618043 |
| Location | 24,919,322 – 24,919,412 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 91.25 |
| Mean single sequence MFE | -18.83 |
| Consensus MFE | -18.80 |
| Energy contribution | -19.13 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.15 |
| Structure conservation index | 1.00 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.618043 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24919322 90 + 27905053 GGUGUUUGUGAUUUAGUGGU---------GGCCAUUAAAAUUUAAAUAUUUCAUUUGCUUUUCGGGUGUUAUAAAUGUGAUUUUUCCAUUUAAAUAAUA ((((((((...((((((((.---------..))))))))...)))))))).((((((.....))))))...((((((.((....))))))))....... ( -14.60) >DroSec_CAF1 32466 99 + 1 GGUGUUUGUGAUUUAGUGGUGUCCAGAGUGGCCAUUAAAAUAUAAAUAUUUCAUUUGCUUUUCGGGUGUUUUAAAUGUGAUUUUUCCAUUUAAAUAAUA ((((((((((.(((((((((..(....)..))))))))).)))))))))).((((((.....)))))).((((((((.((....))))))))))..... ( -21.60) >DroSim_CAF1 28200 99 + 1 GGUGUUUGUGAUUUAGUGGUGUCCAGAGUGGCCAUUAAAAUAUAAAUAUUCCAUUUGCUUUUCGGGUGUUAUAAAUGUGAUUUUUCCAUUUAAAUAGUA ((((((((((.(((((((((..(....)..))))))))).)))))))))).((((((.....))))))...((((((.((....))))))))....... ( -20.30) >consensus GGUGUUUGUGAUUUAGUGGUGUCCAGAGUGGCCAUUAAAAUAUAAAUAUUUCAUUUGCUUUUCGGGUGUUAUAAAUGUGAUUUUUCCAUUUAAAUAAUA ((((((((((.(((((((((..........))))))))).)))))))))).((((((.....))))))...((((((.((....))))))))....... (-18.80 = -19.13 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:33:49 2006