Locus 9400

Sequence ID 3R_DroMel_CAF1
Location 24,918,574 – 24,918,679
Length 105
Max. P 0.572254
window15056

overview

Window 6

Location 24,918,574 – 24,918,679
Length 105
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 87.81
Mean single sequence MFE -31.12
Consensus MFE -22.50
Energy contribution -22.82
Covariance contribution 0.32
Combinations/Pair 1.13
Mean z-score -1.69
Structure conservation index 0.72
SVM decision value 0.08
SVM RNA-class probability 0.572254
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24918574 105 + 27905053
ACAAUUGCUAAAGAGUCGCAGGAUGAAAAUUUCAAAACGACGAUGGCGGCGCCUCUUGCUGCAGCCUCUACUUAGCAAUCGUUG---UUGUGGAAGGGGGGCAGCAAU
...((((((.....((((...((........))....))))....((((((.....)))))).((((((.(((.(((((....)---))))..))))))))))))))) ( -32.50)
>DroSec_CAF1 31727 103 + 1
ACAAUUGCUAAAGAGUCGCAGGAUGAAAAUUUCAAAACGACGAUGGCGGCGCCUCUUGCUGCAGCUUCUACUUAGCAAUCGUUG---UUGUGGAAGG--GGCAGCAAU
....((((((....((((...((........))....))))..))))))......(((((((..(((((((.((((....))))---..))))))).--.))))))). ( -32.30)
>DroSim_CAF1 27454 106 + 1
ACAAUUGCUAAAGAGUCGCAGGAUGAAAAUUUCAAAACGACGAUGGCGGCGCCUCUUGCUGCAGCUUCUACUUAGCAAUCGUUGUUGUUGUGGAAGG--GGCAGCAAU
....((((((....((((...((........))....))))..))))))......(((((((..(((((((.(((((.....)))))..))))))).--.))))))). ( -33.20)
>DroEre_CAF1 30407 103 + 1
ACAAUUGGAAAAGAGUCGCAGGAUGAAAAUUUCAAAACGACGAUGGCGGCGCCUCUUGCUGCAGCUUCUACUUAGCAGUUGUUG---UUGCGGAAGG--GGCAGGAAU
..............(((((..(((....)))((........))..)))))(((((((.(((((((....(((....)))....)---))))))))))--)))...... ( -30.30)
>DroYak_CAF1 30828 87 + 1
ACAAUUGCUAAAGAGUCGCAGGAUGAAAAUUUCAAAACGACGAUGGC----------------GCUUCUACUUAGCAGUUGUUG---UUGCGGAAGC--GGCGGGAAU
(((((((((((((((.(((..(((....)))((........))..))----------------).))))..)))))))))))((---((((....))--))))..... ( -27.30)
>consensus
ACAAUUGCUAAAGAGUCGCAGGAUGAAAAUUUCAAAACGACGAUGGCGGCGCCUCUUGCUGCAGCUUCUACUUAGCAAUCGUUG___UUGUGGAAGG__GGCAGCAAU
....(((((......((((((..(((.....)))...(((((((.((((((.....)))))).(((.......))).)))))))...))))))......))))).... (-22.50 = -22.82 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:33:46 2006