Locus 940

Sequence ID 3R_DroMel_CAF1
Location 3,123,098 – 3,123,210
Length 112
Max. P 0.562338
window1501

overview

Window 1

Location 3,123,098 – 3,123,210
Length 112
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.14
Mean single sequence MFE -34.22
Consensus MFE -14.35
Energy contribution -14.79
Covariance contribution 0.45
Combinations/Pair 1.14
Mean z-score -3.14
Structure conservation index 0.42
SVM decision value 0.06
SVM RNA-class probability 0.562338
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3123098 112 - 27905053
---A--GCUG--CCCGGCGAAGGGGUUAAAAAAUUUGUUUUGAUUUUUUUCCUCUAGAAACUCUUUGGUUUUUGUCUGCUCUGUUCU-UUUUUUUAAGCUUCAGAGCGAGACAGCAGCAG
---.--((((--(.......(((((..((((((((......)))))))).)))))(((((((....)))))))((((((((((..((-(......)))...)))))).)))).))))).. ( -37.10)
>DroSec_CAF1 10690 112 - 1
---A--GCUG--CCCGGCGAAGGGGUUAAAAAAUUUGUUUUGAUUUUUUUCCUCUAGAAACUCUUUGGUUUUUGUCCGCUCUGUUCG-UUUUUUCAAGCUUCAGAGCGAGACGGCAGCAG
---.--((((--((......(((((..((((((((......)))))))).)))))(((((((....)))))))((((((((((...(-(((....))))..))))))).))))))))).. ( -42.10)
>DroSim_CAF1 15997 112 - 1
---A--GCUG--CCCGGCGAAGGGGUUAAAAAAUUUGUUUUGAUUUUUUUCCUCUAGAAACUCUUUGGUUUUUGUCCGCUCUGUUCU-UUUUUUCAAGCUUCAGAGCGAGACGGCAGCAG
---.--((((--((......(((((..((((((((......)))))))).)))))(((((((....)))))))((((((((((..((-(......)))...))))))).))))))))).. ( -41.30)
>DroPer_CAF1 10514 107 - 1
GCUACUGCUGCUCCCUGCGAAGGGGUUAAAAAAUUUGUUUUGAUUUUUUUCCUCUAGAAAUUUUUUU------ACGUUUU-----CGCUGUUUUGGAGCUUCAAAAGGGGA--GCAGGAG
....((.((((((((((((((((.((.(((((((((.(...((......))....).))))))))).------)).))))-----)))..((((((....)))))))))))--)))).)) ( -37.80)
>DroEre_CAF1 10476 110 - 1
GCUA--GCUG--CCCGGCGAAGGGGUUAAAAAAUUUGUUUUGAUUUUUUUCCUUUAGAAACUCUUUGGUUC-UAUGCUUUGCGUUC--UUUUUUUAAGCUUCAGAGCGAGAC---AGCAG
....--((((--(.(.(((((((((..((((((((......)))))))).))).(((((.(.....).)))-))..))))))((((--(.............)))))).).)---))).. ( -24.82)
>DroYak_CAF1 14378 110 - 1
---A--GCUG--CCCGGCGAAGGGGUUAAAAAAUUUGUUUUGAUUUUUUUCCUUUAGAAACUCUUUGGUUUUUGUGUUUUUUUUUUUUUGUUUUUAAGCUUUAGAGCGAGAC---AGCAG
---.--((((--...((.(((((((((((((......)))))))))))))))..((((((((....))))))))...........(((((((((........))))))))))---))).. ( -22.20)
>consensus
___A__GCUG__CCCGGCGAAGGGGUUAAAAAAUUUGUUUUGAUUUUUUUCCUCUAGAAACUCUUUGGUUUUUGUCCGCUCUGUUCU_UUUUUUUAAGCUUCAGAGCGAGAC_GCAGCAG
......((((...(((....(((((..((((((((......)))))))).))))).....((((..(((((........................)))))..)))))).)....)))).. (-14.35 = -14.79 +   0.45) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:05 2006