| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 598,520 – 598,616 |
| Length | 96 |
| Max. P | 0.999476 |
| Location | 598,520 – 598,616 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 77.89 |
| Mean single sequence MFE | -24.16 |
| Consensus MFE | -11.65 |
| Energy contribution | -13.41 |
| Covariance contribution | 1.76 |
| Combinations/Pair | 1.21 |
| Mean z-score | -3.48 |
| Structure conservation index | 0.48 |
| SVM decision value | 3.64 |
| SVM RNA-class probability | 0.999476 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 598520 96 - 27905053 UAGCACGAUUGUAAAA-UAAUUAGCUGCGUGCC-CAUCUUGUGAAUGCUGUAAAUUAAGUCUUUAUGCGUAGUAAAUAUUUUACUGUCCUGCUAAAAA (((((.(((.((((((-((.((.(((((((...-......(((((.(((........))).)))))))))))).)))))))))).))).))))).... ( -26.40) >DroSec_CAF1 14522 84 - 1 UAGCACAAUCGUAAAA-UAAUUAGG------------CUGGUGAAGGCUGAAAAUAAAGUCUUUAUACCUUGUAAAUAUUUUACUGUCCUGCUAAAA- (((((..((.((((((-((((.(((------------...(((((((((........))))))))).))).))...)))))))).))..)))))...- ( -23.30) >DroSim_CAF1 13676 84 - 1 UAGCACAAUCGUAAAA-UAAUUAGG------------CUUGUGAAGGCUGAAAAUGAAGUCUUUAUGCCUUGUAAAUAUUUUACUGUCCUGCUAAAA- (((((..((.((((((-((((.(((------------(..(((((((((........))))))))))))).))...)))))))).))..)))))...- ( -25.70) >DroEre_CAF1 16205 94 - 1 UAGCACAAUCGUAAAA-UAAUUAGGCUCGGGCU-UAGCUUGUGAAGCCUGACAAUGAAGUCU-UAUACAUAGUAAUAAUUUUACUGUCCUGCUAAAA- (((((..((.((((((-(.(((((((((((((.-..)))))...)))).(((......))).-.........)))).))))))).))..)))))...- ( -22.40) >DroYak_CAF1 18213 95 - 1 UAGUGCAAUUGUAAAAAAAAUUAAGUGCGGGCCAAAGCUUGUAAAGGCUGAACAUAAAGUUU-UAU-CUCAGCAAAUAUUUUACAGUCCUGCUAAAA- (((((..(((((((((.........(((((((....)))))))...(((((..((((....)-)))-.))))).....)))))))))..)))))...- ( -23.00) >consensus UAGCACAAUCGUAAAA_UAAUUAGG__CG_GC___A_CUUGUGAAGGCUGAAAAUAAAGUCUUUAUACCUAGUAAAUAUUUUACUGUCCUGCUAAAA_ (((((..((.((((((...((((((..............((((((((((........)))))))))))))))).....)))))).))..))))).... (-11.65 = -13.41 + 1.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:55 2006