Locus 9398

Sequence ID 3R_DroMel_CAF1
Location 24,917,740 – 24,917,855
Length 115
Max. P 0.965818
window15052

overview

Window 2

Location 24,917,740 – 24,917,855
Length 115
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 92.70
Mean single sequence MFE -41.80
Consensus MFE -37.76
Energy contribution -38.32
Covariance contribution 0.56
Combinations/Pair 1.08
Mean z-score -1.59
Structure conservation index 0.90
SVM decision value 1.59
SVM RNA-class probability 0.965818
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24917740 115 - 27905053
AGGAGUUAGGUGGUCCAUCCGAAUGGAGAACGGCUGAGGACUACUCGCUUUAGCCCCGCCGUAUGAACUGUUGAUGGUGUUAUGGCGAUAUGUCGCCGACAACGGACUCGCCAUC
..((((..((((((((((....)))))....((((((((........))))))))))))).......((((((.(((((.((((....)))).))))).))))))))))...... ( -42.20)
>DroSec_CAF1 30914 115 - 1
AGGAGUUAGGUGGUCCAUCCGAAUGGAGAACGGCUGAGGACUACUCGCUUUAGCCCCACCGUAUGAACUGUUGAUGGUGUUAUGGCGAUAUGUCGCCGACUACGGACUCGCCAUC
((.((((.((((((((((....)))))....((((((((........))))))))))))).....)))).))(((((((...((((((....)))))).(....)...))))))) ( -43.40)
>DroSim_CAF1 26643 115 - 1
AGGAGUUAGGUGGUCCAUCCGAAUGGAGAACGGCUGAGGACUACUCGCUUUAGCCCCGCCGUAUGAACUGUUGAUGGUGUUAUGGCGAUAUGUCGCCGACUACGGACUCGCCAUC
((.((((.((((((((((....)))))....((((((((........))))))))))))).....)))).))(((((((...((((((....)))))).(....)...))))))) ( -43.00)
>DroEre_CAF1 29606 105 - 1
AGGAGUUAGGUGGUCCAUCCCAAUGGAGGAUGGC----------UCGCUUUAGCUUCGCCGUAUGAACUGUUGAUGGUGUUAUGGCGAUAUGUCGCCGACUACGGACUCGCCAUC
.(((((((((((..(((((((....).)))))).----------.))).))))))))...............(((((((...((((((....)))))).(....)...))))))) ( -39.70)
>DroYak_CAF1 29980 115 - 1
AGGAGUUAGGUAGUCCAUCCGAAUGGAGGAUGGCUGAGGACUACUCGCUUUAGCUUCGCCGUAUGAACUGUUGAUGGUGUUAUGGCGAUAUGUCGCCGACUACGGACCCGCCAUC
.((.(((..(((((((((((.......)))))(((((((........))))))).((((((((...(((......)))..)))))))).........)))))).)))))...... ( -40.70)
>consensus
AGGAGUUAGGUGGUCCAUCCGAAUGGAGAACGGCUGAGGACUACUCGCUUUAGCCCCGCCGUAUGAACUGUUGAUGGUGUUAUGGCGAUAUGUCGCCGACUACGGACUCGCCAUC
((.((((.((((((((((....)))))....((((((((........))))))))))))).....)))).))(((((((...((((((....)))))).(....)...))))))) (-37.76 = -38.32 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:33:43 2006