Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 24,917,577 – 24,917,720 |
Length | 143 |
Max. P | 0.951133 |
Location | 24,917,577 – 24,917,683 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 93.95 |
Mean single sequence MFE | -19.36 |
Consensus MFE | -15.10 |
Energy contribution | -15.50 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.56 |
Structure conservation index | 0.78 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.517816 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24917577 106 - 27905053 GUAGAAGCAUAAAAAAAUGUUUGUGCAGAGUAGGAAGGAAAAACAAUGCUCUGGCAGGACAGGAUGAGAAUAAGACAAGCCAUGCUCUGCUGCAAAUACA-------CAAUGA ....((((((......))))))((((((((((....(......)..)))))))((((.(.((.(((..............))).)).).)))).....))-------)..... ( -22.84) >DroSec_CAF1 30759 101 - 1 GUAGAAGCAUAAAAAAAUGUUUGUGCAGAGUAGGAAGGAAAAACAAUGCUCUGGCAGGACAGGAUGAGAAUAAGACAAGCCAUG-----CUGCAAAUACA-------CAAUGA (((..(((((.......(((((((.(((((((....(......)..)))))))))).))))((.((.........))..)))))-----)).....))).-------...... ( -18.40) >DroSim_CAF1 26488 101 - 1 GUAGAAGCAUAAAAAAAUGUUUGUGCAGAGUAGGAAGGAAAAACAAUGCUACGGCAGGACAGGAUGAGAAUAAGACAAGCCAUG-----CUGCAAAUACA-------CAAUGA (((.((((((......)))))).)))...((((.(.((........(((....))).....(..(.......)..)...)).).-----)))).......-------...... ( -18.60) >DroEre_CAF1 29431 108 - 1 GUAGAAGCAUAAAAAAAUGUUUGUGCAGAGUAGGAAGGAAAAACAAUGCUCUGGCAGGACAGGAUGAGAAUAAGACAAGGCAUG-----CUGCAAAUACACAGUACACAAUGA (((.((((((......))))))((((((((((....(......)..)))))))....(.(((.(((..............))).-----)))).....)))..)))....... ( -18.54) >DroYak_CAF1 29819 101 - 1 GUAGAAGCAUAAAAAAAUGUUUGUGCAGAGUAGGAAGGAAAAACAAUGCUCUGGCAGGACAGGAUGAGAAUAAGACAAGCCAUG-----CUGCAAAUACA-------CAAUAA (((..(((((.......(((((((.(((((((....(......)..)))))))))).))))((.((.........))..)))))-----)).....))).-------...... ( -18.40) >consensus GUAGAAGCAUAAAAAAAUGUUUGUGCAGAGUAGGAAGGAAAAACAAUGCUCUGGCAGGACAGGAUGAGAAUAAGACAAGCCAUG_____CUGCAAAUACA_______CAAUGA (((.((((((......)))))).)))((((((....(......)..)))))).((((......(((..............)))......)))).................... (-15.10 = -15.50 + 0.40)
Location | 24,917,610 – 24,917,720 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 98.91 |
Mean single sequence MFE | -28.60 |
Consensus MFE | -27.68 |
Energy contribution | -27.52 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.03 |
Mean z-score | -1.61 |
Structure conservation index | 0.97 |
SVM decision value | 1.41 |
SVM RNA-class probability | 0.951133 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24917610 110 - 27905053 CCUCGCCUCCUUCUCCAUUAGUCGCACGCGUUUAUAAGUAGAAGCAUAAAAAAAUGUUUGUGCAGAGUAGGAAGGAAAAACAAUGCUCUGGCAGGACAGGAUGAGAAUAA .(((((((((((((....((.((((((((........))..((((((......)))))))))).)).))))))))).......(((....))).....)).))))..... ( -27.40) >DroSec_CAF1 30787 110 - 1 CCUCGCCUCCUCCUCCAUUAGUCGCACGCGUUUAUAAGUAGAAGCAUAAAAAAAUGUUUGUGCAGAGUAGGAAGGAAAAACAAUGCUCUGGCAGGACAGGAUGAGAAUAA .(((((((..((((((.......((((((........))..((((((......))))))))))((((((....(......)..)))))))).)))).))).))))..... ( -28.50) >DroSim_CAF1 26516 110 - 1 CCUCGCCUCCUCCUCCAUUAGUCGCACGCGUUUAUAAGUAGAAGCAUAAAAAAAUGUUUGUGCAGAGUAGGAAGGAAAAACAAUGCUACGGCAGGACAGGAUGAGAAUAA .(((((((((((((((..((.((((((((........))..((((((......)))))))))).)).)))).)))).......(((....))))))..)).))))..... ( -30.10) >DroEre_CAF1 29466 110 - 1 CCUCGCCUCCUCCUCCAUUAGUCGCACGCGUUUAUAAGUAGAAGCAUAAAAAAAUGUUUGUGCAGAGUAGGAAGGAAAAACAAUGCUCUGGCAGGACAGGAUGAGAAUAA .(((((((..((((((.......((((((........))..((((((......))))))))))((((((....(......)..)))))))).)))).))).))))..... ( -28.50) >DroYak_CAF1 29847 110 - 1 CCUCGCCUCCUCCUCCAUUAGUCGCACGCGUUUAUAAGUAGAAGCAUAAAAAAAUGUUUGUGCAGAGUAGGAAGGAAAAACAAUGCUCUGGCAGGACAGGAUGAGAAUAA .(((((((..((((((.......((((((........))..((((((......))))))))))((((((....(......)..)))))))).)))).))).))))..... ( -28.50) >consensus CCUCGCCUCCUCCUCCAUUAGUCGCACGCGUUUAUAAGUAGAAGCAUAAAAAAAUGUUUGUGCAGAGUAGGAAGGAAAAACAAUGCUCUGGCAGGACAGGAUGAGAAUAA .(((((((((((((((..((.((((((((........))..((((((......)))))))))).)).)))).)))).......(((....))))))..)).))))..... (-27.68 = -27.52 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:33:42 2006