Locus 9396

Sequence ID 3R_DroMel_CAF1
Location 24,916,404 – 24,916,524
Length 120
Max. P 0.705991
window15049

overview

Window 9

Location 24,916,404 – 24,916,524
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 95.08
Mean single sequence MFE -30.48
Consensus MFE -28.96
Energy contribution -29.02
Covariance contribution 0.06
Combinations/Pair 1.05
Mean z-score -1.52
Structure conservation index 0.95
SVM decision value 0.36
SVM RNA-class probability 0.705991
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24916404 120 + 27905053
GCUUUUAUCACUUGGCUGCCAUUAAAUGAAUAUUUAAUGCCCGGCUGCAUUAUCCGCAAUUGUGGCACUAUGGUGGCCAUAGGUUGAAUUGUGGAUCAAUUUAGGCGAUAACAACUCCAU
....(((((...((((..(((((((((....))))))(((((((.(((.......))).))).))))...)))..))))..(.((((((((.....)))))))).))))))......... ( -34.70)
>DroSec_CAF1 29589 117 + 1
GGUUUUAUCACUUGGCUGUCAUUAAAUGAAUAUUUAAUGCCCGGCUGCAUUAUCCGCAAUUGUGGCACUAUG---GCCAUAGGUUGAAUUGUGGAUCAAUUUAGGCGAUAACAACUCCAU
(((((((((.((((((((.((((((((....))))))))..))))).....(((((((((((((((......---))))))......)))))))))......))).))))).)))).... ( -33.00)
>DroEre_CAF1 28255 117 + 1
GCAUUUAUUACUUGGCUGUCAUGAAAUGAAUAUUUAAUGCCCGGCUGCAUUAUCCGCAAUUGUGGCACUAUG---ACCAUAGGUUGAAUUGUGGAUCAAUUUAGGCGAUAACAACUCCAU
...........(((..((((.((((.(((.....((((((......))))))(((((((((.((((.((((.---...)))))))))))))))))))).))))...)))).)))...... ( -25.50)
>DroYak_CAF1 28623 117 + 1
GCAUUUAUUACUUGGCUGUCAUUAAAUGAAUAUUUAAUACCCGGCUGCAUUAUCCGCAAUUGUGGCACUAUG---GCCAUAGGUUGAAUUGCGGAUCAAUUUAGGCGAUAACAACUCCAU
.((((((..((......))...)))))).............((.(((.((((((((((((((((((......---))))))......))))))))).))).))).))............. ( -28.70)
>consensus
GCAUUUAUCACUUGGCUGUCAUUAAAUGAAUAUUUAAUGCCCGGCUGCAUUAUCCGCAAUUGUGGCACUAUG___GCCAUAGGUUGAAUUGUGGAUCAAUUUAGGCGAUAACAACUCCAU
....(((((.((((((((.((((((((....))))))))..))))).....((((((((((.((((.(((((.....)))))))))))))))))))......))).)))))......... (-28.96 = -29.02 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:33:40 2006