Locus 9394

Sequence ID 3R_DroMel_CAF1
Location 24,915,753 – 24,915,872
Length 119
Max. P 0.596507
window15041

overview

Window 1

Location 24,915,753 – 24,915,872
Length 119
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 96.64
Mean single sequence MFE -30.40
Consensus MFE -27.98
Energy contribution -28.73
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -1.60
Structure conservation index 0.92
SVM decision value 0.13
SVM RNA-class probability 0.596507
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24915753 119 - 27905053
GUCCCAAAUAAAGGCAAUCCGGGCAAUCUCAAACCGUCUUAGCCAGGGGCAUAUUAUAGCCGCAGUCAUAGCCACGGCAACAAAGCCAACACACGCACCCCCAGGCGAGGGCAAAUGUA
(((((.....(((((.....(((....))).....))))).(((.((((.........((((..((....))..))))......((........))..)))).)))).))))....... ( -30.60)
>DroSec_CAF1 28933 118 - 1
GUC-CAAAUAAAGGCAAUCCGGGCAAUCUCAAACCGUCUUAGCCAGAGGCGUAUUAUAGCCGCAGUCAUAGCCACGGCAACAAAGCCAACACACGCACCCCCAGGCGAGGGCAAAUGUA
(((-(.......(((....(((...........))).....(((...(((........)))((.......))...)))......)))......(((........))).))))....... ( -29.10)
>DroEre_CAF1 27607 119 - 1
GUCCCAAAUAAAGGCAAUCCGGGCAAUCUCAAACCGUCUUAGCCAGAGGCAUAUAAUAGCCUCAGUCAUAGCCACGGCAACAAAGCCAACACACGCACCCCCAGGCGACGGCAAAUGUA
............(((((..(((...........)))..)).))).(((((........))))).......(((..(((......)))......(((........)))..)))....... ( -31.70)
>DroYak_CAF1 27954 119 - 1
GUCCCAAAUAAAGGCAAUCCGGGCAAUCUCAAACCGUCUAAGCCAGAGGCAUAUAAUAGCCUCAGUCAUAGCCACGGCAACAAAGCCAACACACGCACCCCCAGGCGACGGCAAAUGUA
............(((....(((...........))).....))).(((((........))))).......(((..(((......)))......(((........)))..)))....... ( -30.20)
>consensus
GUCCCAAAUAAAGGCAAUCCGGGCAAUCUCAAACCGUCUUAGCCAGAGGCAUAUAAUAGCCGCAGUCAUAGCCACGGCAACAAAGCCAACACACGCACCCCCAGGCGACGGCAAAUGUA
............(((((..(((...........)))..)).))).(((((........))))).......(((..(((......)))......(((........)))..)))....... (-27.98 = -28.73 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:33:33 2006