Locus 9392

Sequence ID 3R_DroMel_CAF1
Location 24,913,153 – 24,913,269
Length 116
Max. P 0.794807
window15038

overview

Window 8

Location 24,913,153 – 24,913,269
Length 116
Sequences 4
Columns 116
Reading direction reverse
Mean pairwise identity 97.70
Mean single sequence MFE -27.31
Consensus MFE -24.96
Energy contribution -24.77
Covariance contribution -0.19
Combinations/Pair 1.04
Mean z-score -2.06
Structure conservation index 0.91
SVM decision value 0.60
SVM RNA-class probability 0.794807
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24913153 116 - 27905053
CUCAGCACGUGAGACCCAAAAGAGAGCGCUAGAUUUUGGGGCUCUCUCACGUCACGCGCAGCCACCACCAAAACAAUAACAACAAAUAACGGUAACGACACGGAGCACAUCAAAAA
....((.((((.(((.....(((((((.((((...)))).)))))))...)))...((..(((...........................)))..)).))))..)).......... ( -25.93)
>DroSec_CAF1 26312 116 - 1
CUCAGCACGUGAGACCCAAAAGAGAGCGCUAGAUUUUGGGGCUCUCUCACGUCUCGCGCAGCCACCACCAAAACAAUAACAACAAAUAACGGUAACAACACGGAGCACAUCAAAAA
(((.((.((((((((.....(((((((.((((...)))).)))))))...))))))))..))...........................((((....)).)))))........... ( -30.20)
>DroEre_CAF1 24905 115 - 1
CUCAGCACGUGAGACCCAAAAGAGAGCGCUAGAUUUUGGGGCUCUCUCACGUCACGCGCAGCCACCACCA-AACAAUAACAACAAAUAACGGUAACGACAGGGAGCACAUCAAAAA
....((.(((((........(((((((.((((...)))).)))))))....))))).)).((..((....-.....((........)).((....))...))..)).......... ( -26.40)
>DroYak_CAF1 25226 116 - 1
CUCAGCACGUGAGACCCAAAAGAGAGCGCUAAAUUUUGGGGCUCUCUCACGUCACGCGCAGCCACCACCAAAACAAUAACAACAAAUAACGGUAACGACAGGGAGCACAUCAAAAA
....((.(((((........(((((((.(((.....))).)))))))....))))).)).((..((..........((........)).((....))...))..)).......... ( -26.70)
>consensus
CUCAGCACGUGAGACCCAAAAGAGAGCGCUAGAUUUUGGGGCUCUCUCACGUCACGCGCAGCCACCACCAAAACAAUAACAACAAAUAACGGUAACGACACGGAGCACAUCAAAAA
(((.((.((((.(((.....(((((((.((((...)))).)))))))...))).))))..))....(((.....................))).........)))........... (-24.96 = -24.77 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:33:30 2006