| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,911,907 – 24,912,019 |
| Length | 112 |
| Max. P | 0.998686 |
| Location | 24,911,907 – 24,912,019 |
|---|---|
| Length | 112 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 88.75 |
| Mean single sequence MFE | -24.36 |
| Consensus MFE | -22.85 |
| Energy contribution | -22.66 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.09 |
| Mean z-score | -3.59 |
| Structure conservation index | 0.94 |
| SVM decision value | 3.19 |
| SVM RNA-class probability | 0.998686 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24911907 112 + 27905053 UUGUGUUGCCAAAAC--ACUGCACACGCAGCCGGCUAAAAGUAUUUUCGGCAAAUGAAUGCAAAACUGCUGCCAAAAGCCAAAAUCAACAAAAGGCAGCUAAAAAA------AAAAAAAA ....((((((.....--.((((....))))..((((....(......)((((.......(((....)))))))...)))).............)))))).......------........ ( -25.61) >DroSec_CAF1 23550 112 + 1 UUGUGUUGCCAAAACACACUGCACACGCAGCCGGCUAAAAGUAUUUUCGGUAAAUGAAUGCAAAACUGCUGCCAAAAGCCAAAAUCAACAAAAGGCAGCUAAAA--------AAAAAAGA ....((((((........((((....))))..((((....(......)((((.......(((....)))))))...)))).............)))))).....--------........ ( -23.61) >DroEre_CAF1 23620 107 + 1 UUGUGUUGCCAAAAC--ACUGCAAACGCAGCCGGCUAAAAGUAUGUUCGGUAAAUGAAUGCAAAACUGCUGCCAAAAGCCAAAAUCAACAAAAGGCAACUAAAAAAAAA----------- ....((((((.....--.((((....))))..((((...((((.(((..(((......)))..)))))))......)))).............))))))..........----------- ( -26.20) >DroYak_CAF1 23916 118 + 1 UUGUGUUGCCAAAAC--ACUGCAAACGCAGCCUGCUAAAAGUAUUUUCGGUAAAUGAAUGCAAAACUGCUGCCAAAAGCCAAAAUCAACAAAAGGCAACUAACAAAAAAAAAAAAAAAGA ((((((((((.....--.((((....))))..........(.(((((.(((...((...(((....)))...))...))))))))).......))))))..))))............... ( -22.00) >consensus UUGUGUUGCCAAAAC__ACUGCAAACGCAGCCGGCUAAAAGUAUUUUCGGUAAAUGAAUGCAAAACUGCUGCCAAAAGCCAAAAUCAACAAAAGGCAACUAAAAAA______AAAAAAGA ....((((((........((((....))))..((((....(......)((((.......(((....)))))))...)))).............))))))..................... (-22.85 = -22.66 + -0.19)
| Location | 24,911,907 – 24,912,019 |
|---|---|
| Length | 112 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 88.75 |
| Mean single sequence MFE | -26.19 |
| Consensus MFE | -23.65 |
| Energy contribution | -23.40 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.90 |
| SVM decision value | 1.43 |
| SVM RNA-class probability | 0.953041 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24911907 112 - 27905053 UUUUUUUU------UUUUUUAGCUGCCUUUUGUUGAUUUUGGCUUUUGGCAGCAGUUUUGCAUUCAUUUGCCGAAAAUACUUUUAGCCGGCUGCGUGUGCAGU--GUUUUGGCAACACAA ........------.......((((((....(((......)))....)))))).....(((((......((((..............)))).....)))))((--(((.....))))).. ( -28.24) >DroSec_CAF1 23550 112 - 1 UCUUUUUU--------UUUUAGCUGCCUUUUGUUGAUUUUGGCUUUUGGCAGCAGUUUUGCAUUCAUUUACCGAAAAUACUUUUAGCCGGCUGCGUGUGCAGUGUGUUUUGGCAACACAA ........--------.....((((((....(((......)))....)))))).((.((((.(((.......))).........(((..(((((....)))))..)))...)))).)).. ( -25.50) >DroEre_CAF1 23620 107 - 1 -----------UUUUUUUUUAGUUGCCUUUUGUUGAUUUUGGCUUUUGGCAGCAGUUUUGCAUUCAUUUACCGAACAUACUUUUAGCCGGCUGCGUUUGCAGU--GUUUUGGCAACACAA -----------..........((((((............(((((...((..((......)).(((.......)))....))...)))))(((((....)))))--.....)))))).... ( -24.60) >DroYak_CAF1 23916 118 - 1 UCUUUUUUUUUUUUUUUGUUAGUUGCCUUUUGUUGAUUUUGGCUUUUGGCAGCAGUUUUGCAUUCAUUUACCGAAAAUACUUUUAGCAGGCUGCGUUUGCAGU--GUUUUGGCAACACAA .....................((((((..(((((((((((((....(((..((......))..)))....))))))......)))))))(((((....)))))--.....)))))).... ( -26.40) >consensus UCUUUUUU______UUUUUUAGCUGCCUUUUGUUGAUUUUGGCUUUUGGCAGCAGUUUUGCAUUCAUUUACCGAAAAUACUUUUAGCCGGCUGCGUGUGCAGU__GUUUUGGCAACACAA .....................((((((....(((......)))....)))))).((.((((.(((.......)))..............(((((....)))))........)))).)).. (-23.65 = -23.40 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:33:29 2006