Locus 9388

Sequence ID 3R_DroMel_CAF1
Location 24,910,571 – 24,910,691
Length 120
Max. P 0.844708
window15031

overview

Window 1

Location 24,910,571 – 24,910,691
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.42
Mean single sequence MFE -24.72
Consensus MFE -19.72
Energy contribution -20.16
Covariance contribution 0.44
Combinations/Pair 1.20
Mean z-score -1.77
Structure conservation index 0.80
SVM decision value 0.76
SVM RNA-class probability 0.844708
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24910571 120 - 27905053
UAGGGCAGAACAAAUCAAAAGUUAACUACAAACUACCCAUAAAUCAUGCUCAUAACUUUCCAUUACGUUCGAUGGGAAACAGUUCAAUUGGAUGGACUUACAACGUAUGCGAUUAUUUCC
..(((..((.....))...((((.......)))).)))......(((((.......((((((((......))))))))..((((((......))))))......)))))........... ( -19.00)
>DroSec_CAF1 22190 120 - 1
CAGGGCAGAACAAAUCAAAAGUUAACUACAAACUACCCAUAAAUCAUGCUCAUAACUUCCCAUCACGUUCGAUGGGAAACAGUUCAAUUGGGUGGACCUACAACGUCUGUGAUUAUUUUC
....(((((...........((.....))...(((((((........(((......((((((((......))))))))..))).....)))))))..........))))).......... ( -26.72)
>DroSim_CAF1 21828 120 - 1
CAGGGCAGAACAAAUCAAAAGUUAACUACAAACUACCCAUAAAUCAUGCUCAUAACUUCCCAUCACGUUCGAUGGGAAGCAGUUCAAUUGGGUGGACCUACAACGUCUGUGAUUAUUUCC
....(((((...........((.....))...(((((((.......((((.......(((((((......))))))))))).......)))))))..........))))).......... ( -30.75)
>DroEre_CAF1 22262 120 - 1
CAGAGCAGAACAAAUCAAAAGUUAACUACAAACUACCCAUAAAUCAUGUCCAUAACUUCCCAUUACAUUCGAUGGGAAACAGCUCAACUGGGUGAACUUACAACGCCUGCGAUUAUUUUC
....((((............((.....))....((((((.......(((.......((((((((......))))))))))).......))))))............)))).......... ( -22.75)
>DroYak_CAF1 22552 120 - 1
CAGAGCAGAACAAAUCAAAAGUUAACUACAAACUACCCAUAAAUCGUGCUCAUAACUUCCCAUUACGUUUGAUGGGAAACAGUUCAAUUGGCUGAACUUACAACGUCUGCGAUUAUUUCC
....(((((..........((((.......))))..........(((.........(((((((((....)))))))))..((((((......))))))....)))))))).......... ( -24.40)
>consensus
CAGGGCAGAACAAAUCAAAAGUUAACUACAAACUACCCAUAAAUCAUGCUCAUAACUUCCCAUUACGUUCGAUGGGAAACAGUUCAAUUGGGUGGACUUACAACGUCUGCGAUUAUUUCC
....(((((...........((.....))...(((((((........(((......((((((((......))))))))..))).....)))))))..........))))).......... (-19.72 = -20.16 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:33:24 2006